ggKbase home page

13_1_40cm_3_scaffold_167

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_167_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3..818
DNA (816bp) protein (272aa)
Kelch repeat type 1-containing protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZE64_9PROT
Kelch repeat type 1-containing protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Kelch repeat type 1-containing protein
13_1_40cm_3_scaffold_167_2
unknown

Not on your lists

comp(785..1276)
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_trna_2
unknown

Not on your lists

comp(1319..1408)
DNA (90bp)
transferRNA
13_1_40cm_3_scaffold_167_3
unknown

Not on your lists

1432..1566
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_trna_1
unknown

Not on your lists

comp(1436..1511)
DNA (76bp)
transferRNA
13_1_40cm_3_scaffold_167_4
CG_CP02_01, CG_CP02, Bacteria

Not on your lists

1623..2882
DNA (1260bp) protein (420aa)
Response regulator receiver protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QTM1_ACEAZ
response regulator receiver protein; K02282 pilus assembly protein CpaE Tax=CG_CP02_01
response regulator receiver protein
13_1_40cm_3_scaffold_167_5
unknown

Not on your lists

3373..3720
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_6
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3807..5195)
DNA (1389bp) protein (463aa)
Putative beta-lactamase class C penicillin binding protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SDT2_METPP
beta-lactamase class C penicillin binding protein
Putative beta-lactamase class C penicillin binding protein {ECO:0000313|EMBL:ABM93721.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Me
13_1_40cm_3_scaffold_167_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

5263..5643
DNA (381bp) protein (127aa)
HesB/YadR/YfhF n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L061_THERP
HesB/YadR/YfhF
HesB/YadR/YfhF {ECO:0000313|EMBL:ACM06045.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 /
13_1_40cm_3_scaffold_167_8
unknown

Not on your lists

5606..6172
DNA (567bp) protein (189aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_9
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6279..7904)
DNA (1626bp) protein (542aa)
60 kDa chaperonin n=7 Tax=Clostridium thermocellum RepID=CH60_CLOTH rbh
chaperonin GroEL
60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; HSP-60; Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=203119 species="Bacteria; Firmicute
13_1_40cm_3_scaffold_167_10
Coprothermobacter proteolyticus, Coprothermobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7927..8175)
DNA (249bp) protein (83aa)
molecular chaperone GroES n=1 Tax=Coprothermobacter platensis RepID=UPI00037093B5
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000255|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000255|HAMAP-Rule:MF_00580}; TaxID=309798 species="Bacteria; Firmicutes; Clost
13_1_40cm_3_scaffold_167_11
unknown

Not on your lists

comp(8283..8501)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_12
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8501..9304)
DNA (804bp) protein (268aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DUF9_DESRL
metalloendopeptidase glycoprotease family
13_1_40cm_3_scaffold_167_13
unknown

Not on your lists

9350..9679
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(9526..10134)
DNA (609bp) protein (203aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C284_SPHTD
ribosomal-protein-alanine acetyltransferase
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ACZ38351.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sp
13_1_40cm_3_scaffold_167_15
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10134..10718)
DNA (585bp) protein (195aa)
Protease, putative n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FM63_9RHOB
Peptidase M22 {ECO:0000313|EMBL:KDB04290.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;
inactive-like protein of metal-dependent proteases molecular chaperone
13_1_40cm_3_scaffold_167_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10715..11155)
DNA (441bp) protein (147aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K06925 UPF0079 ATP-binding protein id=24419642 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_3_scaffold_167_17
Veillonella sp. oral taxon 158, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11106..12005)
DNA (900bp) protein (300aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
Thiamine-monophosphate kinase n=1 Tax=Veillonella sp. oral taxon 158 str. F0412 RepID=E4LCJ1_9FIRM
thiamine-monophosphate kinase
13_1_40cm_3_scaffold_167_18
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12002..12541)
DNA (540bp) protein (180aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
Thiamine-phosphate synthase n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LIK7_METBM
13_1_40cm_3_scaffold_167_19
Brevibacterium linens, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12613..12831)
DNA (219bp) protein (73aa)
anti-sigma factor n=1 Tax=Brevibacterium linens RepID=UPI0000510519
Anti sigma-R factor, mycothiol system,RsrA {ECO:0000313|EMBL:KHS51846.1}; TaxID=1703 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium linen
putative transmembrane anti-sigma factor
13_1_40cm_3_scaffold_167_20
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12828..13406)
DNA (579bp) protein (193aa)
RNA polymerase sigma factor n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEG4_9CHLR
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;"
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_3_scaffold_167_21
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13467..14444)
DNA (978bp) protein (326aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=868595 species="Bacteria; Firmicu
Alanine racemase n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DNN0_9FIRM
13_1_40cm_3_scaffold_167_22
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(14538..15767)
DNA (1230bp) protein (410aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3Q7_DEHLB
carbohydrate kinase Tax=RBG_13_Chloroflexi_57_8_curated
carbohydrate kinase
13_1_40cm_3_scaffold_167_23
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15784..17625)
DNA (1842bp) protein (614aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|H
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZR1_THEOJ
13_1_40cm_3_scaffold_167_24
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(17712..18683)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002EFED6A
hypothetical protein Tax=CG_Arma_02
13_1_40cm_3_scaffold_167_25
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18680..19576)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGA4_MOOTA
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69305.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
hypothetical protein
13_1_40cm_3_scaffold_167_26
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19580..20512)
DNA (933bp) protein (311aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:00002
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
ornithine carbamoyltransferase n=1 Tax=Aureimonas ureilytica RepID=UPI00037A12AB
13_1_40cm_3_scaffold_167_27
unknown

Not on your lists

comp(20548..21084)
DNA (537bp) protein (179aa)

This feature has no annotations

13_1_40cm_3_scaffold_167_28
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21159..23042
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MEA3_9ACTO
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACY97825.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora
Displaying items 1-30 of 44 in total

View Taxonomy