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13_1_40cm_4_scaffold_9427

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_9427_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

2..298
DNA (297bp) protein (99aa)
rluB; 23S rRNA pseudouridylate synthase B (EC:4.2.1.70); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Pseudouridine synthase n=1 Tax=Clostridium intestinale URNW RepID=U2Q236_9CLOT
hypothetical protein
13_1_40cm_4_scaffold_9427_2
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

339..986
DNA (648bp) protein (216aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase id=3318842 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
13_1_40cm_4_scaffold_9427_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1032..1484
DNA (453bp) protein (151aa)
2Fe-2S ferredoxin n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P859_9BACT
fdxB; 2Fe-2S ferredoxin; K04755 ferredoxin, 2Fe-2S Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fdxB; 2Fe-2S ferredoxin
13_1_40cm_4_scaffold_9427_4
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

1525..2556
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5CB44
von Willebrand factor A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
von Willebrand factor A
13_1_40cm_4_scaffold_9427_5
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2618..4012)
DNA (1395bp) protein (465aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AAT2_THEID
response regulator receiver modulated metal dependent phosphohydrolase Tax=RBG_13_Deltaproteobacteria_61_14_curated
response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_4_scaffold_9427_6
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(4044..5447)
DNA (1404bp) protein (468aa)
Fis family transcriptional regulator Tax=RBG_13_RIF03_48_7_curated
Fis family two component sigma-54 specific transcriptional regulator id=12556394 bin=CNBR_ACIDO species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
13_1_40cm_4_scaffold_9427_7
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

5528..6088
DNA (561bp) protein (187aa)
Response regulator receiver n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0Z2_9BACT
response regulator receiver protein Tax=RBG_13_RIF03_48_7_curated
response regulator receiver protein
13_1_40cm_4_scaffold_9427_8
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6262..7071
DNA (810bp) protein (270aa)
sensory box histidine kinase Tax=RBG_13_Deltaproteobacteria_43_22_curated
PAS sensor protein id=1752261 bin=GWB2_Proteobacteria_55_19 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
sensory box histidine kinase
13_1_40cm_4_scaffold_9427_9
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

7046..8359
DNA (1314bp) protein (438aa)
Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRZ0_SYNAS
Fis family transcriptional regulator Tax=RBG_13_RIF03_48_7_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_9427_10
Bacillus licheniformis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8356..8679
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0003620177
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1348578 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus licheniformis S 16.;"
flgB; flagellar basal body rod protein FlgB
13_1_40cm_4_scaffold_9427_11
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8798..9082
DNA (285bp) protein (95aa)
Flagellar basal-body rod protein FlgC n=3 Tax=Desulfovibrio vulgaris RepID=A1VGW2_DESVV
flgC; flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=882 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" sourc
13_1_40cm_4_scaffold_9427_12
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

9085..9375
DNA (291bp) protein (97aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W3P5_DESIS
flagellar hook-basal body complex subunit FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulf
13_1_40cm_4_scaffold_9427_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9743..11086
DNA (1344bp) protein (448aa)
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF id=12556390 bin=CNBR_ACIDO species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar M-ring protein FliF
13_1_40cm_4_scaffold_9427_14
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

11087..12094
DNA (1008bp) protein (336aa)
Flagellar motor switch protein FliG n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2Z9_9BACT
fliG; flagellar motor switch protein FliG
Flagellar motor switch protein FliG {ECO:0000313|EMBL:BAI80017.1}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulf
13_1_40cm_4_scaffold_9427_15
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12084..12668
DNA (585bp) protein (195aa)
flagellar assembly protein FliH; K02411 flagellar assembly protein FliH Tax=RBG_13_Deltaproteobacteria_60_28_curated
Flagellar assembly protein id=2283873 bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
flagellar assembly protein FliH
13_1_40cm_4_scaffold_9427_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12661..14001
DNA (1341bp) protein (447aa)
Type III secretion system ATPase, FliI/YscN {ECO:0000313|EMBL:CDM65639.1}; EC=3.6.3.15 {ECO:0000313|EMBL:CDM65639.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrin
FliI/YscN family ATPase (EC:3.6.3.14)
ATPase, FliI/YscN family n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D2X0_PAESJ
13_1_40cm_4_scaffold_9427_17
unknown

Not on your lists

13998..14225
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying 17 items

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