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13_1_40cm_4_scaffold_12264

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_12264_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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3..644
DNA (642bp) protein (214aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:ABF40539.1}; EC=5.4.3.8 {ECO:0000313|EMBL:ABF40539.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; C
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRG1_KORVE
glutamate-1-semialdehyde 2,1-aminomutase
13_1_40cm_4_scaffold_12264_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(655..2829)
DNA (2175bp) protein (725aa)
Response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E7Y8_GEOBB
sensory response regulator with diguanylate cyclase domain Tax=RBG_16_Gamma2_65_34_curated
response receiver sensor diguanylate cyclase/phosphodiesterase
13_1_40cm_4_scaffold_12264_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2826..5747)
DNA (2922bp) protein (974aa)
barA; BarA (EC:2.7.13.3) Tax=RBG_16_Gamma2_65_34_curated
Multi-sensor hybrid histidine kinase id=3890978 bin=GWA2_Deltaproteo_65_63 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
signal transduction histidine kinase
13_1_40cm_4_scaffold_12264_4
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5744..6685)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SWJ9_META2
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
13_1_40cm_4_scaffold_12264_5
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(6701..8299)
DNA (1599bp) protein (533aa)
TonB-dependent receptor id=3018610 bin=GWF2_Syntrophobacterales_56_9 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
outer membrane receptor for ferrienterochelin and colicins Tax=RBG_13_Nitrospirae_43_8_curated
outer membrane receptor for ferrienterochelin and colicins
13_1_40cm_4_scaffold_12264_6

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comp(8819..10915)
DNA (2097bp) protein (699aa)
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:AIA17821.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
recQ id=2013958 bin=GWD2_Deltaproteobacteria_55_8 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RecQ familyATP-dependent DNA helicase
13_1_40cm_4_scaffold_12264_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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11112..13193
DNA (2082bp) protein (694aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Fis family transcriptional regulator id=12556814 bin=CNBR_ACIDO species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-54 dependent DNA-binding response regulator
13_1_40cm_4_scaffold_12264_8
unknown

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13721..13957
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_4_scaffold_12264_9
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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13954..15141
DNA (1188bp) protein (396aa)
RND family efflux transporter, MFP subunit n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2F6_DESTA
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AFM23747.1}; Flags: Precursor;; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; De
13_1_40cm_4_scaffold_12264_10
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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15138..16022
DNA (885bp) protein (295aa)
Cation/multidrug efflux pump n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C2F7_DESTA
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:AFM23748.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomon
Displaying 10 items

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