ggKbase home page

13_1_20cm_2_scaffold_1180

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1180_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(117..758)
DNA (642bp) protein (214aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI0003624E5C
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter permease
13_1_20cm_2_scaffold_1180_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(801..1643)
DNA (843bp) protein (281aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z4_9ARCH
ABC transporter-like protein; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_20cm_2_scaffold_1180_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1640..2506)
DNA (867bp) protein (289aa)
Cobalt/nickel ABC transporter ATP-binding protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Z3_9ARCH
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein Tax=RBG_16_Archaea_50_20_curated
cobalt/nickel ABC transporter ATP-binding protein
13_1_20cm_2_scaffold_1180_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(2565..3350)
DNA (786bp) protein (262aa)
Predicted phosphoesterase, DHH family n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKC6_HYPBU
DHH family phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RBG_16_Archaea_50_20_curated
DHH family phosphoesterase
13_1_20cm_2_scaffold_1180_5
unknown

Not on your lists

3511..3663
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_2_scaffold_1180_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3605..4036)
DNA (432bp) protein (144aa)
Prefoldin subunit beta n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta Tax=RBG_16_Archaea_50_20_curated
pfdB; prefoldin, subunit beta
13_1_20cm_2_scaffold_1180_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(4279..4719)
DNA (441bp) protein (147aa)
50S ribosomal protein L37Ae n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AI24_PYRYC
rpl37ae; 50S ribosomal protein L37Ae; K02921 large subunit ribosomal protein L37Ae Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L37Ae
13_1_20cm_2_scaffold_1180_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(4719..5537)
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
13_1_20cm_2_scaffold_1180_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(5537..6259)
DNA (723bp) protein (241aa)
Exosome complex component Rrp41 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM9_PYRF1
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
exosome complex exonuclease 1
13_1_20cm_2_scaffold_1180_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6217..6921)
DNA (705bp) protein (235aa)
Exosome complex component Rrp4 n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RB40_METFO
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp4
13_1_20cm_2_scaffold_1180_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(6934..7623)
DNA (690bp) protein (230aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
rRNA metabolism protein, SBDS family
13_1_20cm_2_scaffold_1180_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(7620..8363)
DNA (744bp) protein (248aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
proteasome alpha subunit (EC:3.4.25.1)
Proteasome alpha subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y4_9ARCH
13_1_20cm_2_scaffold_1180_13
unknown

Not on your lists

comp(8547..8882)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_2_scaffold_1180_14
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

9112..9477
DNA (366bp) protein (122aa)
peptidyl-tRNA hydrolase; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=RBG_16_Bathyarchaeota_48_13_curated
Peptidyl-tRNA hydrolase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH27_PYRYC
peptidyl-tRNA hydrolase
13_1_20cm_2_scaffold_1180_15
unknown

Not on your lists

9660..9878
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_2_scaffold_1180_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(9837..11582)
DNA (1746bp) protein (582aa)
yycF; two-component response regulator; K07668 two-component system, OmpR family, response regulator VicR Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_20cm_2_scaffold_1180_17
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11997..13007)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABP4_IGNH4
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_20cm_2_scaffold_1180_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

13159..13923
DNA (765bp) protein (255aa)
putative circadian clock protein KaiC (EC:2.7.11.1)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_20cm_2_scaffold_1180_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(13920..14990)
DNA (1071bp) protein (357aa)
Universally conserved protein n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKD6_HYPBU
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_20cm_2_scaffold_1180_20
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15010..15750)
DNA (741bp) protein (247aa)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
circadian clock protein KaiC Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_20cm_2_scaffold_1180_21
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

16096..16899
DNA (804bp) protein (268aa)
Isopentenyl phosphate kinase n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B6E2_METTP
aspartate/glutamate/uridylate kinase; K06981 Tax=RBG_16_Bathyarchaeota_48_13_curated
aspartate/glutamate/uridylate kinase
13_1_20cm_2_scaffold_1180_22
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(16893..17903)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZVR1_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_20cm_2_scaffold_1180_23
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17979..18473)
DNA (495bp) protein (165aa)
50S ribosomal protein L15e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IDZ5_NITGG
50S ribosomal protein L15e {ECO:0000313|EMBL:AIC15890.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaer
rpl15e; 50S ribosomal protein L15e
13_1_20cm_2_scaffold_1180_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

18530..19885
DNA (1356bp) protein (452aa)
NADP-dependent malic enzyme n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8J1_9EURY rbh
NADP-dependent malic enzyme Tax=RBG_16_Archaea_50_20_curated
NADP-dependent malic enzyme
13_1_20cm_2_scaffold_1180_25
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20177..20572
DNA (396bp) protein (132aa)
Reduced coenzyme F420:NADP oxidoreductase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWR0_METFV
dinucleotide-binding protein; K06988 Tax=RBG_16_Archaea_50_20_curated
dinucleotide-binding protein
13_1_20cm_2_scaffold_1180_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

20591..21706
DNA (1116bp) protein (372aa)
Putative GTPase n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=Q975G0_SULTO
GTP binding protein Tax=RBG_16_Archaea_50_20_curated
ychF; translation-associated GTPase
Displaying 26 items

View Taxonomy