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13_2_20cm_scaffold_3415

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3415_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..215)
DNA (213bp) protein (71aa)
ahcY; adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase id=4527174 bin=GWF2_Methylomirabilis_70_14 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3415_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(304..630)
DNA (327bp) protein (109aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase id=4810655 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_3415_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1480..2526)
DNA (1047bp) protein (349aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=3879951 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3415_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2523..2939)
DNA (417bp) protein (139aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
alpha-amylase/alpha-mannosidase id=14625754 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_3415_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4556..4753)
DNA (198bp) protein (66aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glmZ(sRNA)-inactivating NTPase
13_2_20cm_scaffold_3415_6
unknown

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5341..5469
DNA (129bp) protein (43aa)

This feature has no annotations

13_2_20cm_scaffold_3415_7
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5466..5792)
DNA (327bp) protein (109aa)
Ribosomal subunit interface protein {ECO:0000313|EMBL:EOS31938.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
13_2_20cm_scaffold_3415_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5827..7290)
DNA (1464bp) protein (488aa)
RNA polymerase sigma-54 factor id=3879943 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma 54 subunit RpoN
13_2_20cm_scaffold_3415_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7308..8030)
DNA (723bp) protein (241aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=3879942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
13_2_20cm_scaffold_3415_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8033..8641)
DNA (609bp) protein (203aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Lipopolysaccharide transport periplasmic protein LptA id=4411420 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
OstA-like protein
13_2_20cm_scaffold_3415_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8679..9143)
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3879938 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3415_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9241..10221)
DNA (981bp) protein (327aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=GWA2_Rokubacteria_73_35_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase id=3879936 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3415_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10218..11060)
DNA (843bp) protein (281aa)
kdsA; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase; KDO-8-phosphate synthetase, KDOPS) (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase id=4810645 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_3415_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11057..12664)
DNA (1608bp) protein (536aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) id=14625764 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
13_2_20cm_scaffold_3415_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12661..14208)
DNA (1548bp) protein (516aa)
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=CSP1_6_Rokubacteria
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=14625765 bin=bin7_NC10_sister species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_3415_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14631..15209
DNA (579bp) protein (193aa)
integrase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD id=14625766 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
recombinase
Displaying 16 items

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