ggKbase home page

13_2_20cm_scaffold_7564

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_7564_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


1..462
DNA (462bp) protein (154aa)
30S ribosomal protein S1 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAE4_9BACT
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpsA; 30S ribosomal protein S1
13_2_20cm_scaffold_7564_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

475..1353
DNA (879bp) protein (293aa)
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Peptidase S49, putative signal peptide peptidase SppA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAE5_9BACT
13_2_20cm_scaffold_7564_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1365..1643
DNA (279bp) protein (93aa)
Integration host factor, beta subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAE6_9BACT
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ihfB; integration host factor subunit beta
13_2_20cm_scaffold_7564_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1653..2666
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAE7_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_7564_5
unknown

Not on your lists

comp(2679..2858)
DNA (180bp) protein (60aa)

This feature has no annotations

13_2_20cm_scaffold_7564_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2912..3961)
DNA (1050bp) protein (350aa)
ttuD; putative hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ttuD; putative hydroxypyruvate reductase (EC:1.1.1.81)
Putative Hydroxypyruvate reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAL2_9BACT
13_2_20cm_scaffold_7564_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4208..5227)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAL1_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_7564_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5306..6007
DNA (702bp) protein (234aa)
putative uracil-DNA glycosylase (EC:3.2.2.-) Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative uracil-DNA glycosylase (EC:3.2.2.-)
Putative Uracil-DNA glycosylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAL0_9BACT
13_2_20cm_scaffold_7564_9
unknown

Not on your lists

comp(6004..6498)
DNA (495bp) protein (165aa)

This feature has no annotations

13_2_20cm_scaffold_7564_10
unknown

Not on your lists

comp(6503..6898)
DNA (396bp) protein (132aa)

This feature has no annotations

13_2_20cm_scaffold_7564_11
unknown

Not on your lists

comp(7105..7293)
DNA (189bp) protein (63aa)

This feature has no annotations

13_2_20cm_scaffold_7564_12
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(7704..8357)
DNA (654bp) protein (218aa)
talC; transaldolase, putative fructose-6-phosphate aldolase (EC:2.2.1.2 4.1.2.-); K00616 transaldolase [EC:2.2.1.2] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
talC; transaldolase, putative fructose-6-phosphate aldolase (EC:2.2.1.2 4.1.2.-)
Probable transaldolase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAK9_9BACT
13_2_20cm_scaffold_7564_13
unknown

Not on your lists

8561..8725
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_scaffold_7564_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(8727..8996)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAK7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40266.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_7564_15
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(9041..9703)
DNA (663bp) protein (221aa)
Uncharacterized protein id=4528639 bin=GWC2_Nitrospirae_57_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
13_2_20cm_scaffold_7564_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(9714..10262)
DNA (549bp) protein (183aa)
hypothetical protein id=14429394 bin=bin3_NC10 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
13_2_20cm_scaffold_7564_17
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(10265..10807)
DNA (543bp) protein (181aa)
rpoE; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWC2_Nitrospirae_57_9_curated
RNA polymerase sigma factor id=4707989 bin=GWC2_Nitrospirae-rel_56_14 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
ECF subfamily RNA polymerase sigma-24 subunit
13_2_20cm_scaffold_7564_18
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11018..11281
DNA (264bp) protein (88aa)
LuxR family transcriptional regulator n=1 Tax=Thauera sp. 28 RepID=N6YNA4_9RHOO
LuxR family transcriptional regulator {ECO:0000313|EMBL:ENO81321.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 2
LuxR family transcriptional regulator
13_2_20cm_scaffold_7564_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(11322..12716)
DNA (1395bp) protein (465aa)
Excinuclease ABC, subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAT3_9BACT
uvrA; excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_7564_20
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13178..13834
DNA (657bp) protein (219aa)
Multidrug transport protein, mfs family n=2 Tax=Ralstonia solanacearum RepID=F6G476_RALS8
multidrug transport protein, mfs family
Multidrug transport protein, mfs family {ECO:0000313|EMBL:AEG70272.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Rals
13_2_20cm_scaffold_7564_21
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

13886..14554
DNA (669bp) protein (223aa)
glyoxalase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003738760
Glyoxalase/bleomycin resistance protein/dioxygenase; K07032 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_2_20cm_scaffold_7564_22
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

14568..15098
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0Z4D5_9BACT
hypothetical protein Tax=CG_Arma_01
hypothetical protein
Displaying 22 items

View Taxonomy