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MPF_scaffold_5

Alias: MPF_Firmicutes_38_45_1

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Displaying items 1-30 of 128 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MPF_scaffold_5_1
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(124..2247)
DNA (2124bp) protein (708aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase
Pnp; polynucleotide phosphorylase rbh
Polyribonucleotide nucleotidyltransferase
MPF_scaffold_5_2
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2312..2578)
DNA (267bp) protein (89aa)
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Cal
30S ribosomal protein S15
MPF_scaffold_5_3
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2667..3677)
DNA (1011bp) protein (337aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=391606 species="Bacteria; Firmicutes;
RibF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2) rbh
FAD synthase
MPF_scaffold_5_4
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3631..4488)
DNA (858bp) protein (286aa)
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthas
truB; tRNA pseudouridine synthase B rbh
tRNA pseudouridine synthase B
MPF_scaffold_5_5
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4485..5438)
DNA (954bp) protein (318aa)
exopolyphosphatase rbh
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:AAM24613.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="
Exopolyphosphatase-related proteins
MPF_scaffold_5_6
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5435..5803)
DNA (369bp) protein (123aa)
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Cal
Ribosome-binding factor A
MPF_scaffold_5_7
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5813..7918)
DNA (2106bp) protein (702aa)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" sourc
infB; translation initiation factor IF-2 rbh
Translation initiation factor IF-2
MPF_scaffold_5_8
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7920..8243)
DNA (324bp) protein (108aa)
RPL8A; ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:AAM24616.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" sou
Ribosomal protein HS6-type (S12/L30/L7a)
MPF_scaffold_5_9
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8233..8505)
DNA (273bp) protein (91aa)
nucleic-acid-binding protein implicated in transcription termination
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:AAM24617.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanae
Predicted nucleic-acid-binding protein implicated in transcription termination
MPF_scaffold_5_10
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8519..9559)
DNA (1041bp) protein (347aa)
nusA; transcription elongation factor NusA rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Calda
NusA antitermination factor
MPF_scaffold_5_11
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9584..10039)
DNA (456bp) protein (152aa)
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterace
hypothetical protein rbh
Ribosome maturation factor RimP
MPF_scaffold_5_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10147..14352)
DNA (4206bp) protein (1402aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=391606 species="Bacteria; Firmicut
polC; DNA polymerase III PolC (EC:2.7.7.7) rbh
DNA polymerase III PolC-type
MPF_scaffold_5_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14368..14988)
DNA (621bp) protein (207aa)
WcaA3; cell wall biosynthesis glycosyltransferase rbh
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:AAM24621.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
Glycosyltransferases involved in cell wall biogenesis
MPF_scaffold_5_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14994..16052)
DNA (1059bp) protein (353aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS0
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
MPF_scaffold_5_15
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16067..17065)
DNA (999bp) protein (333aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobactera
membrane-associated Zn-dependent protease 1 rbh
Predicted membrane-associated Zn-dependent protease 1
MPF_scaffold_5_16
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17072..18220)
DNA (1149bp) protein (383aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
Dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267) rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase
MPF_scaffold_5_17
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18233..19018)
DNA (786bp) protein (262aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermo
CdsA; CDP-diglyceride synthetase rbh
Phosphatidate cytidylyltransferase
MPF_scaffold_5_18
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19021..19764)
DNA (744bp) protein (248aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobact
UppS; undecaprenyl pyrophosphate synthase rbh
Isoprenyl transferase
MPF_scaffold_5_19
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19811..19987)
DNA (177bp) protein (59aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERM92375.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerob
Putative uncharacterized protein
MPF_scaffold_5_20
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19984..20538)
DNA (555bp) protein (185aa)
frr; ribosome recycling factor rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=391606 species="Bacteria;
Ribosome-recycling factor
MPF_scaffold_5_21
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20540..21253)
DNA (714bp) protein (238aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
pyrH; uridylate kinase rbh
Uridylate kinase
MPF_scaffold_5_22
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21350..21952)
DNA (603bp) protein (201aa)
tsf; elongation factor Ts rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoana
Elongation factor Ts
MPF_scaffold_5_23
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22028..22735)
DNA (708bp) protein (236aa)
rpsB; 30S ribosomal protein S2 rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldana
30S ribosomal protein S2
MPF_scaffold_5_24
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22884..23165)
DNA (282bp) protein (94aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM24633.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_5_25
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23176..24540)
DNA (1365bp) protein (455aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM24634.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
Putative uncharacterized protein
MPF_scaffold_5_26
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24555..25295)
DNA (741bp) protein (247aa)
FliA3; DNA-directed RNA polymerase specialized sigma subunit rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldan
RNA polymerase sigma factor
MPF_scaffold_5_27
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25319..25807)
DNA (489bp) protein (163aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000255|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000255|HAMAP-Rule:MF_01440};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerob
CheD; chemoreceptor glutamine deamidase CheD rbh
Probable chemoreceptor glutamine deamidase CheD
MPF_scaffold_5_28
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25788..26423)
DNA (636bp) protein (212aa)
CheC; chemotaxis protein CheC rbh
Chemotaxis protein CheC, inhibitor of MCP methylation {ECO:0000313|EMBL:KKC29615.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaero
Chemotaxis protein CheC, inhibitor of MCP methylation
MPF_scaffold_5_29
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26420..26845)
DNA (426bp) protein (142aa)
CheW4; chemotaxis signal transduction protein
Chemotaxis protein CheW {ECO:0000313|EMBL:ERM92312.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerob
Chemotaxis signal transduction protein
MPF_scaffold_5_30
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26862..28802)
DNA (1941bp) protein (647aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae;
CheA2; chemotaxis protein histidine kinase-like kinase rbh
Chemotaxis protein histidine kinase and related kinases
Displaying items 1-30 of 128 in total

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