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MEL_B2_6_11 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
whiG; RNA polymerase sigma factor similarity KEGG
DB: KEGG
39.7 262.0 213 1.00e-52 sen:SACE_6040
SIGMA70_2 (db=PatternScan db_id=PS00716 from=248 to=274 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 sen:SACE_6040
FliA_WhiG: RNA polymerase sigma factor, F (db=HMMTigr db_id=TIGR02479 from=58 to=279 evalue=2.7e-78 interpro_id=IPR012845 interpro_description=RNA polymerase sigma factor, FliA/WhiG GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 2.70e-78 sen:SACE_6040
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=53 to=278 evalue=2.9e-32 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 2.90e-32 sen:SACE_6040
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=189 to=289 evalue=7.7e-23 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 7.70e-23 sen:SACE_6040
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=44 to=130 evalue=5.2e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 5.20e-21 sen:SACE_6040
(db=HMMPfam db_id=PF04545 from=227 to=276 evalue=4.3e-19 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 4.30e-19 sen:SACE_6040
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=131 to=206 evalue=7.8e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 7.80e-15 sen:SACE_6040
(db=HMMPfam db_id=PF04542 from=73 to=130 evalue=1.3e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.30e-11 sen:SACE_6040
(db=HMMPfam db_id=PF04539 from=138 to=214 evalue=6.8e-11 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 6.80e-11 sen:SACE_6040
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=248 to=263 evalue=1.8e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.80e-10 sen:SACE_6040
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=231 to=243 evalue=1.8e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.80e-10 sen:SACE_6040
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=109 to=117 evalue=1.8e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.80e-10 sen:SACE_6040
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=85 to=98 evalue=1.8e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.80e-10 sen:SACE_6040
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=263 to=274 evalue=1.8e-10 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.80e-10 sen:SACE_6040
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=213 to=276 evalue=1.7e-09 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 1.70e-09 sen:SACE_6040
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=67 to=128 evalue=1.6e-07) iprscan interpro
DB: Gene3D
null null null 1.60e-07 sen:SACE_6040
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost UNIPROT
DB: UniProtKB
100.0 291.0 567 1.40e-158 R6P3E6_9CLOT
RNA polymerase sigma-28 subunit FliA/WhiG (EC:4.1.1.65); K02405 RNA polymerase sigma factor for flagellar operon FliA alias=MEL_C2_C00010G00012 id=471627 tax=MEL_C2 species=Populus trichocarpa genus=Populus taxon_order=Malpighiales taxon_class=unknown phylum=Streptophyta similarity UNIREF
DB: UNIREF90
69.0 null 372 8.60e-101 sen:SACE_6040