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MEL_B2_6

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_6_1
unknown

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)
3..71 - ( gc_cont=0.362)
MEL_B2_6_2
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(184..789)
DNA (606bp) protein (202aa)
seg (db=Seg db_id=seg from=4 to=19)
TPR-like (db=superfamily db_id=SSF48452 from=65 to=186 evalue=2.1e-14)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=72 to=186 evalue=4.5e-11 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=65 to=198 evalue=3.4e-06)
best hit to ACD20: SLEI family protein n=1 Tax=Tetrahymena thermophila SB210 kelly wrighton (11/17/12)
MEL_B2_6_3
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

885..1418
DNA (534bp) protein (178aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
best hit to ACD20 nadh dehydrogenase nuoG on contig 8688 kelly wrighton (11/17/12)
MEL_B2_6_4
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

1415..1741
DNA (327bp) protein (109aa)
NADH dehydrogenase subunit K
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=30)
MEL_B2_6_5
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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1741..2898
DNA (1158bp) protein (386aa)
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic n=1 Tax=Chara vulgaris RepID=NU5C_CHAVU (db=UNIREF evalue=9.7e-25 bit_score=120.0 identity=27.4 coverage=72.7979274611399)
proton-translocating NADH-quinone oxidoreductase subunit L
transmembrane_regions (db=TMHMM db_id=tmhmm from=184 to=206)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=243)
MEL_B2_6_6
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

2917..4440
DNA (1524bp) protein (508aa)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Desulfobacca acetoxidans DSM 11109 RepID=F2NJZ0_DESAR (db=UNIREF evalue=0.0 bit_score=304.0 identity=32.9 coverage=93.89763779527559)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
MEL_B2_6_7
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

4477..5919
DNA (1443bp) protein (481aa)
nuoN; NADH dehydrogenase I chain N (EC:1.6.5.3)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=368 to=390)
transmembrane_regions (db=TMHMM db_id=tmhmm from=326 to=348)
MEL_B2_6_8
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(5924..6553)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=7 to=19)
Uncharacterized protein {ECO:0000313|EMBL:CDC18867.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_6_9
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(6556..7158)
DNA (603bp) protein (201aa)
6556..7158 - ( gc_cont=0.338)
Uncharacterized protein {ECO:0000313|EMBL:CDC18869.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
Poor hit to: Hore_01810 NADH dehydrogenase I subunit G (EC:1.6.5.3); K00336 NADH dehydrogenase I subunit G [EC:1.6.5.3], hydrogenase? kelly wrighton (11/17/12)
MEL_B2_6_10
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

7279..8670
DNA (1392bp) protein (464aa)
DNA repair protein radA n=1 Tax=Caloramator australicus RC3 RepID=G0V3X8_9CLOT (db=UNIREF evalue=0.0 bit_score=507.0 identity=53.7 coverage=96.33620689655173)
radA; DNA repair protein RadA (EC:2.1.1.63)
radA; DNA repair protein RadA (EC:2.1.1.63)
sms: DNA repair protein RadA (db=HMMTigr db_id=TIGR00416 from=1 to=450 evalue=1.0e-226 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
MEL_B2_6_11
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

8736..9611
DNA (876bp) protein (292aa)
whiG; RNA polymerase sigma factor
SIGMA70_2 (db=PatternScan db_id=PS00716 from=248 to=274 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
FliA_WhiG: RNA polymerase sigma factor, F (db=HMMTigr db_id=TIGR02479 from=58 to=279 evalue=2.7e-78 interpro_id=IPR012845 interpro_description=RNA polymerase sigma factor, FliA/WhiG GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=53 to=278 evalue=2.9e-32 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
MEL_B2_6_12
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

9716..10216
DNA (501bp) protein (167aa)
NADH dehydrogenase I subunit E (EC:1.6.5.3)
COMPLEX1_24K (db=PatternScan db_id=PS01099 from=117 to=135 evalue=0.0 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF01257 from=14 to=159 evalue=3.4e-47 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
NADH dehydrogenase [ubiquinone] (complex I), flavoprotein 2/NADH:quinone oxidoreductase (complex I), NuoE subunit (db=HMMPIR db_id=PIRSF000216 from=2 to=166 evalue=7.2e-44 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
MEL_B2_6_13
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

10217..12073
DNA (1857bp) protein (619aa)
NADH dehydrogenase I subunit F n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0X3_HALOH (db=UNIREF evalue=0.0 bit_score=840.0 identity=65.4 coverage=97.4151857835218)
NADH dehydrogenase I subunit F (EC:1.6.5.3)
NADH dehydrogenase I subunit F (EC:1.6.5.3)
seg (db=Seg db_id=seg from=402 to=411)
MEL_B2_6_14
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

12088..13872
DNA (1785bp) protein (595aa)
Fe-only hydrogenase, catalytic subunit alpha
Fe-only hydrogenase, catalytic subunit alpha
NADH dehydrogenase I subunit G n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0X4_HALOH (db=UNIREF evalue=0.0 bit_score=590.0 identity=49.4 coverage=96.80672268907563)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=198 to=209 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
catalytic subunit trimeric FeFe hydrogenase kelly wrighton (11/17/12)
MEL_B2_6_15
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

13979..14605
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BY77_9CLOT (db=UNIREF evalue=0.0 bit_score=235.0 identity=51.2 coverage=98.56459330143541)
hrb; high molecular weight rubredoxin Hrb
no description (db=Gene3D db_id=G3DSA:2.30.110.10 from=1 to=167 evalue=2.9e-29 interpro_id=IPR012349 interpro_description=FMN-binding split barrel GO=Molecular Function: FMN binding (GO:0010181), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=1 to=154 evalue=5.3e-28 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
MEL_B2_6_16
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

14632..15711
DNA (1080bp) protein (360aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=8 Tax=Caldicellulosiruptor RepID=A4XHW2_CALS8 (db=UNIREF evalue=0.0 bit_score=380.0 identity=58.0 coverage=90.0)
deoxyguanosinetriphosphate triphosphohydrolase-like protein
deoxyguanosinetriphosphate triphosphohydrolase-like protein
seg (db=Seg db_id=seg from=10 to=21)
MEL_B2_6_17
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(15740..17065)
DNA (1326bp) protein (442aa)
15740..17065 - ( gc_cont=0.396)
Uncharacterized protein {ECO:0000313|EMBL:CDC17871.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_6_18
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(17117..17443)
DNA (327bp) protein (109aa)
Small multidrug resistance protein n=2 Tax=Delftia RepID=A7KK54_DELAC (db=UNIREF evalue=6.7e-32 bit_score=142.0 identity=61.5 coverage=94.4954128440367)
multidrug transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
MEL_B2_6_19
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(17495..18859)
DNA (1365bp) protein (455aa)
MATE efflux family protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LB16_9FIRM (db=UNIREF evalue=0.0 bit_score=471.0 identity=49.1 coverage=96.92307692307692)
MATE efflux family protein
MATE efflux family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
MEL_B2_6_20
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

19004..19900
DNA (897bp) protein (299aa)
19004..19900 + ( gc_cont=0.330)
Uncharacterized protein {ECO:0000313|EMBL:CDC17874.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_6_21
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

19915..20574
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y3R3_9FIRM (db=UNIREF evalue=0.0 bit_score=248.0 identity=55.0 coverage=92.72727272727272)
hypothetical protein
Uncharacterised conserved protein, UCP020269 type (db=HMMPIR db_id=PIRSF020269 from=1 to=219 evalue=8.4e-73 interpro_id=IPR009501 interpro_description=Uncharacterised conserved protein UCP020269)
(db=HMMPfam db_id=PF02589 from=96 to=213 evalue=4.0e-33 interpro_id=IPR003741 interpro_description=Domain of unknown function DUF162)
MEL_B2_6_22
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

20710..22269
DNA (1560bp) protein (520aa)
seg (db=Seg db_id=seg from=480 to=487)
seg (db=Seg db_id=seg from=378 to=394)
seg (db=Seg db_id=seg from=326 to=342)
seg (db=Seg db_id=seg from=176 to=216)
MEL_B2_6_23
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(22309..22794)
DNA (486bp) protein (162aa)
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.97.1.4 1.17.4.2)
NrdG: anaerobic ribonucleoside-triphosphate (db=HMMTigr db_id=TIGR02491 from=2 to=150 evalue=4.4e-74 interpro_id=IPR012837 interpro_description=Ribonucleoside-triphosphate reductase activating, anaerobic GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: [formate-C-acetyltransferase]-activating enzyme activity (GO:0043365), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
Anaerobic ribonucleoside-triphosphate reductase class III, small subunit (db=HMMPIR db_id=PIRSF000368 from=1 to=161 evalue=6.6e-68 interpro_id=IPR012837 interpro_description=Ribonucleoside-triphosphate reductase activating, anaerobic GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: [formate-C-acetyltransferase]-activating enzyme activity (GO:0043365), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF04055 from=23 to=122 evalue=1.0e-08 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
MEL_B2_6_24
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(22796..25069)
DNA (2274bp) protein (758aa)
Anaerobic ribonucleoside-triphosphate reductase n=2 Tax=unclassified Lachnospiraceae RepID=E9RUT9_9FIRM (db=UNIREF evalue=0.0 bit_score=1130.0 identity=75.7 coverage=92.87598944591029)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
seg (db=Seg db_id=seg from=2 to=17)
MEL_B2_6_25
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(25296..25613)
DNA (318bp) protein (106aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=20)
MEL_B2_6_26
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

25734..26621
DNA (888bp) protein (296aa)
HGE-1 beta-lactamase n=1 Tax=uncultured organism RepID=C8C0F1_9ZZZZ (db=UNIREF evalue=0.0 bit_score=272.0 identity=49.3 coverage=90.87837837837837)
beta-lactamase class A
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=22)
seg (db=Seg db_id=seg from=1 to=17)
MEL_B2_6_27
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(27243..27611)
DNA (369bp) protein (123aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=77)
Uncharacterized protein {ECO:0000313|EMBL:CDC21811.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_6_28
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(27659..28546)
DNA (888bp) protein (296aa)
coiled-coil (db=Coil db_id=coil from=141 to=162 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=19 to=30)
seg (db=Seg db_id=seg from=85 to=98)
MEL_B2_6_29
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(28617..30725)
DNA (2109bp) protein (703aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751:SF33 from=107 to=446 evalue=3.0e-101)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=107 to=446 evalue=3.0e-101)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=51 to=437 evalue=1.4e-90 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
MEL_B2_6_30
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(30722..31564)
DNA (843bp) protein (281aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Methanoplanus petrolearius DSM 11571 RepID=E1REW2_METP4 (db=UNIREF evalue=0.0 bit_score=227.0 identity=40.2 coverage=99.28825622775801)
NAD-dependent epimerase/dehydratase
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=4 to=278 evalue=6.0e-33)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=7 to=272 evalue=2.7e-25)
Displaying items 1-30 of 73 in total

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