ggKbase home page

SCNpilot_BF_INOC_scaffold_258_58

Organism: SCNpilot_BF_INOC_Leifsonia_70_13

near complete RP 47 / 55 MC: 1 BSCG 45 / 51 ASCG 9 / 38
Location: comp(59333..60001)

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock DNA-binding domain n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHE7_METPP similarity UNIREF
DB: UNIREF100
  • Identity: 46.5
  • Coverage: 200.0
  • Bit_score: 175
  • Evalue 4.90e-41
Cold shock-like protein CspA {ECO:0000313|EMBL:EWS60398.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.5
  • Coverage: 200.0
  • Bit_score: 176
  • Evalue 5.30e-41
cold shock DNA-binding domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 200.0
  • Bit_score: 175
  • Evalue 1.40e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylibium sp. T29-B → Methylibium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 669
ATGAAACCCGGCCCGGTGCGCATGAGCGGTGTGCTGACGACCTGGAACGACGAACGCGGATTCGGCTTCGTCGCCCCGGCCGTCGGCGGACCCGACGTGTTCGTGCACATCTCGGCGTTCGGCGAGGGCGACCCGCGTCCCCTCGCGGGCGACGAGATCGGCTACGAGCTCGAGTACTCGCGCGAGGGCAAGCCGCGCGCCGGCCGCGCCACGGTGCAGTCGGCGGTGCCGCGGCCCGCGCGCGAGCCCGCGCCGCATCCGCGTCTCGCCCCCACCAACCGCGCGAGCCGGCTCGGCTACCTCGCGGTGTTCGGGTTCATCTGCATCGCGTTCGTGGTGGCGCTCATCCGTCCCATCCCGTACTGGGTGTGGATCCTGTACCTCGGGATGTCGTTCGCCACCTTCGTCGCGTACGCGCTCGACAAGCGTGCGGCGGCCTCGGAGGGCTGGCGGCTCAGCGAGGGATCGCTGCTCGCCCTCGGCCTCGCGTGCGGCTGGCCGGGCGCTGTGATCGCCCAGCAGGTGTTCCGGCACAAGACGGTCAAGATGAGCTTCCAGGTGGTGTTCTGGGTGACGGTCATGGTGAACGTGATCGCCTTCGTCGTGTTCAGCTGGGTGGCGACGCTCTCGGCACCCGACGCGGTCTCGGTGCTCACCCCGCTCGGCTGA
PROTEIN sequence
Length: 223
MKPGPVRMSGVLTTWNDERGFGFVAPAVGGPDVFVHISAFGEGDPRPLAGDEIGYELEYSREGKPRAGRATVQSAVPRPAREPAPHPRLAPTNRASRLGYLAVFGFICIAFVVALIRPIPYWVWILYLGMSFATFVAYALDKRAAASEGWRLSEGSLLALGLACGWPGAVIAQQVFRHKTVKMSFQVVFWVTVMVNVIAFVVFSWVATLSAPDAVSVLTPLG*