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SW_8_UNK

In projects: SW_8

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %
Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 51-100 of 16401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_144
Class: Halobacteria (83.33%)
24 19979 bp 58.72 23.76 79.79
sw_8_scaffold_798 24 18755 bp 55.93 9.59 64.25
sw_8_scaffold_2005 24 21276 bp 54.42 9.04 70.98
sw_8_scaffold_289 24 13430 bp 60.45 11.55 82.25
sw_8_scaffold_825 24 24525 bp 56.37 8.98 78.63
sw_8_scaffold_3038 23 10630 bp 44.02 8.04 92.96
sw_8_scaffold_471 23 15914 bp 36.76 8.43 64.81
sw_8_scaffold_310
Class: Halobacteria (78.26%)
23 21899 bp 61.45 22.64 83.78
sw_8_scaffold_553 22 12778 bp 54.16 9.29 83.16
sw_8_scaffold_877
Order: Halobacteriales (77.27%)
22 20389 bp 69.18 22.23 86.93
sw_8_scaffold_345 22 13851 bp 54.02 9.49 72.71
sw_8_scaffold_1131
Class: Halobacteria (68.18%)
22 12260 bp 59.89 13.66 78.72
sw_8_scaffold_398 22 19639 bp 55.04 9.14 82.28
sw_8_scaffold_673 22 18651 bp 53.87 9.71 68.99
sw_8_scaffold_402
Order: Halobacteriales (63.64%)
22 33921 bp 61.63 24.27 56.39
sw_8_scaffold_699 22 18934 bp 53.39 9.56 61.59
sw_8_scaffold_839 22 15080 bp 53.64 8.78 75.94
sw_8_scaffold_1300 22 14257 bp 36.04 6.91 78.02
sw_8_scaffold_234
Order: Natrialbales (68.18%)
22 24876 bp 69.50 29.46 88.52
sw_8_scaffold_427
Class: Halobacteria (72.73%)
22 16239 bp 65.96 27.32 85.74
sw_8_scaffold_2191 22 18790 bp 55.06 8.96 68.06
sw_8_scaffold_439
Domain: Bacteria (95.24%)
21 27758 bp 56.65 14.75 87.94
sw_8_scaffold_1455 21 17122 bp 54.39 9.04 76.17
sw_8_scaffold_318 21 22292 bp 56.57 8.46 77.77
sw_8_scaffold_1136
Class: Halobacteria (61.9%)
21 14651 bp 57.28 17.56 84.47
sw_8_scaffold_383 21 12638 bp 55.53 11.24 93.48
sw_8_scaffold_630
Class: Halobacteria (52.38%)
21 20437 bp 58.74 10.11 82.88
sw_8_scaffold_654 21 14750 bp 55.68 8.73 78.16
sw_8_scaffold_1601 21 13239 bp 54.51 8.71 76.75
sw_8_scaffold_1190 21 20416 bp 54.40 9.42 66.42
sw_8_scaffold_568 21 15018 bp 59.91 11.12 93.37
sw_8_scaffold_546 21 20376 bp 55.04 9.05 79.12
sw_8_scaffold_477 21 13978 bp 55.47 8.87 71.08
sw_8_scaffold_129
Phylum: Bacteroidetes (52.38%)
21 29331 bp 64.33 35.69 85.91
sw_8_scaffold_714 21 13080 bp 60.24 17.96 88.30
sw_8_scaffold_2124
Species: Halovirus HHTV-1 (50%)
20 9073 bp 56.56 9.52 90.60
sw_8_scaffold_1200 20 15463 bp 54.18 9.84 79.66
sw_8_scaffold_1707
Domain: Bacteria (55%)
20 15237 bp 38.26 8.76 62.79
sw_8_scaffold_1086
Order: Halobacteriales (50%)
20 18171 bp 61.03 16.34 73.37
sw_8_scaffold_536 20 12526 bp 54.20 8.69 77.48
sw_8_scaffold_2422
Class: Halobacteria (55%)
20 16844 bp 39.37 6.86 86.26
sw_8_scaffold_493
Genus: Halorubrum (55%)
20 21020 bp 66.08 20.75 77.26
sw_8_scaffold_1256
Class: Halobacteria (70%)
20 10828 bp 56.91 14.97 78.27
sw_8_scaffold_406 20 11954 bp 54.78 9.08 67.11
sw_8_scaffold_565 20 12876 bp 39.00 6.74 78.56
sw_8_scaffold_1372 20 14341 bp 53.73 9.16 76.75
sw_8_scaffold_181
Class: Oscillatoriophycideae (60%)
20 17823 bp 39.26 18.33 89.72
sw_8_scaffold_135
Domain: Bacteria (85%)
20 27841 bp 66.44 49.69 91.56
sw_8_scaffold_245
Phylum: Cyanobacteria (65%)
20 19058 bp 45.21 16.05 67.11
sw_8_scaffold_2453 20 11053 bp 54.78 9.26 69.97
Displaying items 51-100 of 16401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.