ggKbase home page
Advanced Search
Search Help

SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 451-500 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_14755
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1242 bp 59.74 8.86 100.24
sw_10_scaffold_14695
Species: Halobacterium salinarum (66.67%)
3 1245 bp 62.41 146.35 100.24
sw_10_scaffold_15744
Species: halophilic archaeon J07HB67 (50%)
2 1682 bp 67.60 101.58 100.24
sw_10_scaffold_14414
Species: Natronomonas pharaonis (50%)
2 1263 bp 73.24 36.03 100.24
sw_10_scaffold_14342 2 1266 bp 56.79 5.61 100.24
sw_10_scaffold_14299
Species: uncultured archaeon A07HB70 (100%)
2 1269 bp 64.93 10.87 100.24
sw_10_scaffold_8253
Species: Natronococcus occultus (50%)
2 2128 bp 69.97 59.02 100.24
sw_10_scaffold_3702
Species: Natronomonas pharaonis (100%)
2 2984 bp 65.62 43.50 100.24
sw_10_scaffold_8910
Species: Halococcus salifodinae (50%)
4 3002 bp 69.02 30.51 100.23
sw_10_scaffold_13995 4 1287 bp 44.68 7.61 100.23
sw_10_scaffold_25144
Species: Rhodothermus marinus (100%)
3 1718 bp 64.14 7.68 100.23
sw_10_scaffold_13886 2 1293 bp 53.67 7.12 100.23
sw_10_scaffold_13890
Species: Halorubrum aidingense (50%)
2 1293 bp 68.60 17.94 100.23
sw_10_scaffold_4689
Species: Halosimplex carlsbadense (50%)
4 2598 bp 65.17 11.24 100.23
sw_10_scaffold_29487
Species: Natronomonas moolapensis (100%)
2 1308 bp 70.18 106.12 100.23
sw_10_scaffold_8755
Species: Pyrococcus yayanosii (50%)
2 1748 bp 42.39 6.24 100.23
sw_10_scaffold_13466
Species: Halorubrum sp. AJ67 (50%)
2 1320 bp 37.35 4.55 100.23
sw_10_scaffold_3519 3 3089 bp 54.10 5.99 100.23
sw_10_scaffold_13290
Species: Halococcus saccharolyticus (100%)
2 1332 bp 66.44 29.35 100.23
sw_10_scaffold_31111
Species: Natrinema versiforme (50%)
2 1338 bp 69.88 13.60 100.22
sw_10_scaffold_5885
Species: Chroococcidiopsis thermalis (50%)
2 2248 bp 47.02 7.47 100.22
sw_10_scaffold_17551
Species: Haloferax gibbonsii (50%)
2 1805 bp 69.53 37.12 100.22
sw_10_scaffold_12829
Species: BJP_IG2103_Methanoregula_55_19 (50%)
2 1365 bp 34.36 4.03 100.22
sw_10_scaffold_4190
Species: Natronomonas moolapensis (50%)
2 2769 bp 68.00 59.23 100.22
sw_10_scaffold_12472
Species: Halosimplex carlsbadense (100%)
2 1389 bp 70.99 23.90 100.22
sw_10_scaffold_27574
Species: halophilic archaeon J07HB67 (50%)
2 1392 bp 67.89 61.62 100.22
sw_10_scaffold_12397
Phylum: Parcubacteria (66.67%)
3 1395 bp 41.72 5.30 100.22
sw_10_scaffold_12315
Species: Halobacterium sp. DL1 (50%)
2 1401 bp 65.02 17.20 100.21
sw_10_scaffold_25598
Species: Candidatus Halobonum tyrrellensis (50%)
2 1407 bp 76.40 38.73 100.21
sw_10_scaffold_12020
Species: Natronomonas pharaonis (50%)
2 1422 bp 73.21 48.66 100.21
sw_10_scaffold_11876 3 1434 bp 55.58 8.51 100.21
sw_10_scaffold_13576
Class: Halobacteria (66.67%)
3 1925 bp 54.18 16.94 100.21
sw_10_scaffold_864 3 7263 bp 44.75 19.92 100.21
sw_10_scaffold_11524
Species: RBG_13_Pacearchaeota_36_9_curated (50%)
2 1461 bp 54.21 5.34 100.21
sw_10_scaffold_11380
Species: Desulfocapsa sulfexigens (50%)
2 1473 bp 51.93 5.02 100.20
sw_10_scaffold_11034
Species: Halococcus morrhuae (50%)
2 1503 bp 65.34 19.29 100.20
sw_10_scaffold_11035
Species: Halococcus thailandensis (50%)
2 1503 bp 65.87 13.84 100.20
sw_10_scaffold_19818
Species: Halomicrobium mukohataei (50%)
2 1003 bp 70.79 8.47 100.20
sw_10_scaffold_19720
Species: Marinithermus hydrothermalis (50%)
2 1006 bp 72.96 12.43 100.20
sw_10_scaffold_19730
Species: Halogranum salarium (50%)
2 1006 bp 70.18 8.65 100.20
sw_10_scaffold_3638
Species: Halobacterium salinarum (50%)
2 3021 bp 62.89 44.82 100.20
sw_10_scaffold_4856
Phylum: Euryarchaeota (66.67%)
3 2533 bp 58.86 10.94 100.20
sw_10_scaffold_19497
Species: Halogranum salarium (50%)
2 1015 bp 65.71 10.44 100.20
sw_10_scaffold_10770
Species: Halalkalicoccus jeotgali (50%)
2 1527 bp 69.42 13.36 100.20
sw_10_scaffold_19285
Species: Methanosaeta thermophila (50%)
2 1024 bp 46.29 4.20 100.20
sw_10_scaffold_19214
Species: Coleofasciculus chthonoplastes (50%)
2 1027 bp 49.27 7.30 100.20
sw_10_scaffold_10622
Species: Halorubrum lacusprofundi (50%)
2 1542 bp 67.64 44.29 100.20
sw_10_scaffold_37376
Species: Halorubrum aidingense (50%)
2 1036 bp 65.73 11.20 100.19
sw_10_scaffold_39582 2 1042 bp 56.91 6.53 100.19
sw_10_scaffold_18677
Species: Halococcus salifodinae (100%)
2 1048 bp 65.65 26.34 100.19
Displaying items 451-500 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.