ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %

Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37

Displaying items 501-550 of 17394 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_18679 Species: Halorhabdus utahensis (100%)	2	1048 bp	66.60	9.64	100.19
sw_10_scaffold_8157 Species: Haloarcula californiae (50%)	2	2108 bp	66.08	30.60	100.19
sw_10_scaffold_18399 Species: Candidatus Haloredivivus sp. G17 (50%)	2	1060 bp	47.83	4.81	100.19
sw_10_scaffold_4502 Species: Caldicellulosiruptor lactoaceticus (50%)	2	2662 bp	48.69	10.48	100.19
sw_10_scaffold_18282 Species: Natronomonas moolapensis (50%)	2	1066 bp	72.42	42.40	100.19
sw_10_scaffold_18267 Species: Haloarcula sinaiiensis (50%)	2	1066 bp	60.98	8.82	100.19
sw_10_scaffold_18274 Species: Haloarcula amylolytica (50%)	2	1066 bp	40.71	4.50	100.19
sw_10_scaffold_18196 Species: Natronomonas pharaonis (50%)	2	1069 bp	69.50	34.24	100.19
sw_10_scaffold_6301 Species: Haloarcula marismortui (100%)	2	2153 bp	56.53	18.44	100.19
sw_10_scaffold_17994 Species: Halorhabdus utahensis (100%)	2	1078 bp	53.43	7.05	100.19
sw_10_scaffold_17857 Species: Haloarcula vallismortis (50%)	2	1084 bp	59.96	28.23	100.18
sw_10_scaffold_17729 Species: Halococcus morrhuae (50%)	2	1090 bp	58.81	7.71	100.18
sw_10_scaffold_17653 Species: Natronomonas moolapensis (100%)	2	1093 bp	70.63	30.65	100.18
sw_10_scaffold_9863 Species: Halorhabdus utahensis (50%)	2	2195 bp	58.41	11.39	100.18
sw_10_scaffold_17466	2	1102 bp	34.12	3.54	100.18
sw_10_scaffold_9525 Species: Halosimplex carlsbadense (50%)	2	1653 bp	60.01	12.10	100.18
sw_10_scaffold_9470 Domain: Bacteria (66.67%)	3	1659 bp	66.55	13.98	100.18
sw_10_scaffold_17312	2	1108 bp	62.55	7.94	100.18
sw_10_scaffold_17249 Species: Lyngbya aestuarii (50%)	2	1111 bp	48.78	9.00	100.18
sw_10_scaffold_24923 Species: Natronomonas pharaonis (50%)	2	1668 bp	76.32	70.13	100.18
sw_10_scaffold_9202 Species: R_OP11_Curtissbacteria_38_11b (50%)	2	1689 bp	40.91	6.51	100.18
sw_10_scaffold_34843 Species: Halosimplex carlsbadense (66.67%)	3	1129 bp	72.10	12.67	100.18
sw_10_scaffold_21552 Genus: Halococcus (66.67%)	3	1698 bp	66.25	32.98	100.18
sw_10_scaffold_36315 Species: Halococcus saccharolyticus (50%)	2	1138 bp	64.32	11.34	100.18
sw_10_scaffold_16653 Species: Natronomonas moolapensis (50%)	2	1138 bp	71.97	57.29	100.18
sw_10_scaffold_5704 Species: Natronomonas pharaonis (100%)	3	2285 bp	71.86	43.37	100.18
sw_10_scaffold_16548 Species: Halococcus saccharolyticus (50%)	2	1144 bp	71.42	22.55	100.18
sw_10_scaffold_16430 Class: Halobacteria (66.67%)	3	1150 bp	66.09	40.70	100.17
sw_10_scaffold_21447	2	1734 bp	56.23	6.46	100.17
sw_10_scaffold_16163 Species: Halorhabdus utahensis (50%)	2	1165 bp	72.36	15.71	100.17
sw_10_scaffold_2764 Species: Haloarcula vallismortis (100%)	2	3534 bp	61.63	51.87	100.17
sw_10_scaffold_10768 Species: Halosimplex carlsbadense (66.67%)	3	2363 bp	67.80	22.89	100.17
sw_10_scaffold_15829 Species: Natrialba aegyptia (50%)	2	1183 bp	63.57	11.50	100.17
sw_10_scaffold_35076 Species: Halarchaeum acidiphilum (50%)	2	1186 bp	69.48	29.76	100.17
sw_10_scaffold_15768 Species: Halorubrum aidingense (50%)	2	1186 bp	73.44	48.65	100.17
sw_10_scaffold_14605 Species: Jatropha curcas (50%)	2	2375 bp	54.91	5.89	100.17
sw_10_scaffold_15540 Species: Halorhabdus tiamatea (50%)	2	1198 bp	55.68	8.01	100.17
sw_10_scaffold_33680 Species: Natrialba hulunbeirensis (50%)	2	1210 bp	42.64	5.45	100.16
sw_10_scaffold_15217 Species: Halosimplex carlsbadense (50%)	2	1216 bp	72.12	18.01	100.16
sw_10_scaffold_5126 Species: Natronomonas pharaonis (66.67%)	3	2444 bp	71.69	121.73	100.16
sw_10_scaffold_15036 Species: halophilic archaeon J07HX64 (100%)	2	1225 bp	71.02	10.04	100.16
sw_10_scaffold_31417 Species: Methylobacterium sp. ME121 (50%)	2	1231 bp	70.19	5.36	100.16
sw_10_scaffold_3499 Species: Halococcus saccharolyticus (50%)	4	3100 bp	66.84	38.26	100.16
sw_10_scaffold_14738 Species: marine sediment metagenome (100%)	2	1243 bp	43.93	7.40	100.16
sw_10_scaffold_14628 Species: Halorhabdus utahensis (50%)	2	1249 bp	68.45	10.97	100.16
sw_10_scaffold_14527 Species: Halococcus hamelinensis (50%)	2	1255 bp	69.32	25.74	100.16
sw_10_scaffold_14390	2	1264 bp	36.16	36.47	100.16
sw_10_scaffold_14391	2	1264 bp	35.68	31.80	100.16
sw_10_scaffold_14397	2	1264 bp	46.12	5.06	100.16
sw_10_scaffold_14194 Species: Halococcus salifodinae (100%)	2	1276 bp	64.66	11.36	100.16

Displaying items 501-550 of 17394 in total

SW_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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