ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %

Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37

Displaying items 401-450 of 17394 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_10_scaffold_13805 Species: Haloarcula californiae (100%)	2	1298 bp	56.32	9.71	100.31
sw_10_scaffold_9724 Species: Halorubrum coriense (75%)	4	1633 bp	69.01	55.60	100.31
sw_10_scaffold_9479 Species: Haloferax elongans (50%)	2	1657 bp	33.07	4.59	100.30
sw_10_scaffold_13347 Species: Halobacterium salinarum (50%)	2	1328 bp	72.97	10.02	100.30
sw_10_scaffold_13255 Species: Halosimplex carlsbadense (100%)	2	1334 bp	70.76	15.07	100.30
sw_10_scaffold_13161 Species: Natronomonas moolapensis (66.67%)	3	1340 bp	68.96	94.70	100.30
sw_10_scaffold_13166 Species: Halococcus saccharolyticus (50%)	2	1340 bp	71.27	13.66	100.30
sw_10_scaffold_1745 Species: Halococcus thailandensis (100%)	4	4720 bp	58.39	23.62	100.30
sw_10_scaffold_19369 Species: Candidatus Haloredivivus sp. G17 (50%)	2	1020 bp	46.76	4.90	100.29
sw_10_scaffold_19395 Species: Halogeometricum borinquense (50%)	2	1020 bp	69.02	12.16	100.29
sw_10_scaffold_12740 Species: Natronomonas pharaonis (100%)	2	1370 bp	73.28	106.50	100.29
sw_10_scaffold_19158 Species: Natronomonas pharaonis (100%)	2	1029 bp	62.20	14.48	100.29
sw_10_scaffold_19028 Species: Azospira oryzae (50%)	2	1035 bp	46.57	4.44	100.29
sw_10_scaffold_18937 Species: Modestobacter sp. KNN45-2b (50%)	2	1038 bp	68.40	6.55	100.29
sw_10_scaffold_13461 Species: Halorhabdus utahensis (100%)	2	1732 bp	65.30	16.63	100.29
sw_10_scaffold_18858 Species: Candidatus Microthrix parvicella (50%)	2	1041 bp	69.36	13.74	100.29
sw_10_scaffold_18795 Order: Halobacteriales (66.67%)	3	1747 bp	69.20	9.90	100.29
sw_10_scaffold_18576 Species: CG_Bacteroid_01 (50%)	2	1053 bp	46.15	5.22	100.29
sw_10_scaffold_12244 Species: Halorubrum coriense (50%)	2	1406 bp	69.70	17.57	100.28
sw_10_scaffold_18366 Species: Halobacterium sp. DL1 (50%)	2	1062 bp	70.24	8.10	100.28
sw_10_scaffold_18296 Species: Natronococcus occultus (50%)	2	1065 bp	66.95	8.73	100.28
sw_10_scaffold_11706 Order: Halobacteriales (75%)	4	2130 bp	67.89	16.20	100.28
sw_10_scaffold_4996 Genus: Halococcus (66.67%)	3	2486 bp	65.61	9.77	100.28
sw_10_scaffold_18226 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1068 bp	68.35	34.18	100.28
sw_10_scaffold_3258 Species: Natronorubrum sulfidifaciens (50%)	4	3219 bp	53.46	8.79	100.28
sw_10_scaffold_11735 Species: Natronomonas pharaonis (50%)	2	1445 bp	69.62	38.48	100.28
sw_10_scaffold_21282 Species: Halococcus salifodinae (50%)	2	1451 bp	68.50	11.03	100.28
sw_10_scaffold_17754 Species: Halalkalicoccus jeotgali (50%)	2	1089 bp	57.21	7.25	100.28
sw_10_scaffold_9217 Order: Natrialbales (50%)	4	2217 bp	66.31	12.27	100.27
sw_10_scaffold_17276	3	1110 bp	47.84	9.19	100.27
sw_10_scaffold_17082 Species: Halosimplex carlsbadense (100%)	2	1119 bp	70.96	22.79	100.27
sw_10_scaffold_17021 Species: Haloquadratum walsbyi (50%)	2	1122 bp	59.27	12.30	100.27
sw_10_scaffold_33125 Species: Natronomonas pharaonis (100%)	2	1128 bp	72.61	83.42	100.27
sw_10_scaffold_16870 Species: Haloarcula amylolytica (50%)	2	1128 bp	73.40	12.59	100.27
sw_10_scaffold_16872 Species: Halococcus salifodinae (66.67%)	3	1128 bp	65.07	33.07	100.27
sw_10_scaffold_16892 Species: Candidatus Halobonum tyrrellensis (50%)	2	1128 bp	54.70	11.26	100.27
sw_10_scaffold_16747 Species: Natronorubrum tibetense (50%)	2	1134 bp	52.47	7.67	100.27
sw_10_scaffold_16622 Species: archaeon GW2011_AR6 (50%)	2	1140 bp	46.49	6.93	100.26
sw_10_scaffold_2433 Order: Halobacteriales (66.67%)	3	3809 bp	72.28	34.47	100.26
sw_10_scaffold_7574	5	1921 bp	47.84	5.83	100.26
sw_10_scaffold_16240 Species: AR4 (50%)	2	1161 bp	43.24	9.39	100.26
sw_10_scaffold_16013 Species: Candidatus Halobonum tyrrellensis (50%)	2	1173 bp	69.65	38.11	100.26
sw_10_scaffold_7347 Species: Haladaptatus paucihalophilus (50%)	2	1957 bp	58.87	8.74	100.26
sw_10_scaffold_11916 Species: Methanocaldococcus sp. JH146 (50%)	2	2361 bp	39.14	6.31	100.25
sw_10_scaffold_6481 Genus: Natronomonas (85.71%)	7	2831 bp	71.32	47.65	100.25
sw_10_scaffold_21361 Species: Halogeometricum borinquense (66.67%)	3	1622 bp	63.75	12.33	100.25
sw_10_scaffold_15111 Species: Jeotgalibacillus alimentarius (50%)	2	1221 bp	60.20	9.75	100.25
sw_10_scaffold_6835 Species: Natronomonas pharaonis (50%)	4	2047 bp	67.95	29.75	100.24
sw_10_scaffold_9611 Species: Salinibacter ruber (50%)	2	1646 bp	71.14	7.65	100.24
sw_10_scaffold_3940 Species: Halosimplex carlsbadense (100%)	3	2885 bp	73.28	16.85	100.24

Displaying items 401-450 of 17394 in total

SW_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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