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CARPRO_1

Alias: CARPRO_6

Search features with annotation key words

Displaying items 31-60 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARPRO_1_31
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34026..35648)
DNA (1623bp) protein (541aa)
Carbohydrate kinase, FGGY-like protein rbh
Carbohydrate kinase, FGGY-like protein rbh
Carbohydrate kinase, FGGY-like protein n=1 Tax=Cellulomonas fimi ATCC 484 RepID=F4H0N5_CELFA (db=UNIREF evalue=4.0e-177 bit_score=625.0 identity=67.74 coverage=97.7818853974122)
seg (db=Seg db_id=seg from=217 to=230)
CARPRO_1_32
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35713..36141)
DNA (429bp) protein (143aa)
DNA protecting protein DprA
DNA protecting protein DprA n=69 Tax=Propionibacterium RepID=D4HEW2_PROAS (db=UNIREF evalue=5.0e-29 bit_score=130.0 identity=53.52 coverage=98.6013986013986)
(db=HMMPfam db_id=PF02481 from=1 to=53 evalue=6.9e-12 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
DNA protecting protein DprA {ECO:0000313|EMBL:AFV89910.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium ac
CARPRO_1_33
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36153..36422)
DNA (270bp) protein (90aa)
36153..36422 - ( gc_cont=0.722)
hypothetical protein
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EGY78202.1}; EC=1.1.1.35 {ECO:0000313|EMBL:EGY78202.1};; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Pr
CARPRO_1_34
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36592..37926)
DNA (1335bp) protein (445aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGY78203.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
Uncharacterized protein n=3 Tax=Propionibacterium avidum RepID=M9V8I9_9ACTO
CARPRO_1_35
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38351..38617
DNA (267bp) protein (89aa)
38351..38617 + ( gc_cont=0.655)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGY78205.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_36
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38727..39329)
DNA (603bp) protein (201aa)
38727..39329 - ( gc_cont=0.635)
hypothetical protein
XRE family transcriptional regulator {ECO:0000313|EMBL:EGY78206.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibact
CARPRO_1_37

Not on your lists

comp(39326..39520)
DNA (195bp) protein (65aa)
39326..39520 - ( gc_cont=0.544)
Uncharacterized protein {ECO:0000313|EMBL:ETJ38505.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
CARPRO_1_38
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40547..40831)
DNA (285bp) protein (95aa)
toxin-antitoxin system
(db=HMMPfam db_id=PF02661 from=12 to=50 evalue=0.00011 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing-related)
FIDO (db=ProfileScan db_id=PS51459 from=1 to=91 evalue=8.822 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing-related)
Toxin-antitoxin system n=3 Tax=Propionibacterium avidum RepID=M9VF86_9ACTO
CARPRO_1_39
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40923..41468)
DNA (546bp) protein (182aa)
prophage ps3 protein 01 rbh
Prophage ps3 protein 01 n=3 Tax=Propionibacterium avidum RepID=M9V8I3_9ACTO
Putative phage-associated protein {ECO:0000313|EMBL:EGY78208.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacteri
CARPRO_1_40
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41544..42065)
DNA (522bp) protein (174aa)
Zn peptidase rbh
(db=HMMPfam db_id=PF06114 from=60 to=170 evalue=6.4e-12 interpro_id=IPR010359 interpro_description=Protein of unknown function DUF955)
Zn peptidase n=3 Tax=Propionibacterium avidum RepID=M9VAL1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EGY78209.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_41
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42186..42500)
DNA (315bp) protein (105aa)
42186..42500 - ( gc_cont=0.667)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGY78210.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_42
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43611..44099)
DNA (489bp) protein (163aa)
43611..44099 - ( gc_cont=0.620)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EGY78213.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_43
unknown

Not on your lists

comp(44045..44779)
DNA (735bp) protein (245aa)
44045..44779 - ( gc_cont=0.531)
CARPRO_1_44
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44996..46387
DNA (1392bp) protein (464aa)
Transposase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 RepID=D7GI97_PROFC (db=UNIREF evalue=0.0 bit_score=686.0 identity=94.4 coverage=76.7241379310345)
tnpA; transposase rbh
tnpA; transposase rbh
(db=HMMPfam db_id=PF01610 from=182 to=294 evalue=2.2e-17 interpro_id=IPR002560 interpro_description=Transposase, IS204/IS1001/IS1096/IS1165 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
CARPRO_1_45
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46507..46821)
DNA (315bp) protein (105aa)
46507..46821 - ( gc_cont=0.648)
hypothetical protein
Beta-ketoacyl synthase {ECO:0000313|EMBL:EGY78217.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum A
CARPRO_1_46
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(47448..47699)
DNA (252bp) protein (84aa)
seg (db=Seg db_id=seg from=4 to=16)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGY78219.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_47
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(47755..47907)
DNA (153bp) protein (51aa)
seg (db=Seg db_id=seg from=5 to=17)
Uncharacterized protein {ECO:0000313|EMBL:EGY78220.1}; TaxID=997355 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium avidum
CARPRO_1_48
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(48142..49089)
DNA (948bp) protein (316aa)
integrase catalytic subunit rbh
Integrase catalytic subunit (Fragment) n=1 Tax=Actinomyces sp. oral taxon 178 str. F0338 RepID=E8JLV0_9ACTO (db=UNIREF evalue=2.0e-98 bit_score=362.0 identity=73.77 coverage=76.5822784810127)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=133 to=307 evalue=6.9e-35 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
(db=HMMPfam db_id=PF00665 from=137 to=258 evalue=5.8e-22 interpro_id=IPR001584 interpro_description=Integrase, catalytic core GO=Biological Process: DNA integration (GO:0015074))
CARPRO_1_49
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(49380..50012)
DNA (633bp) protein (211aa)
ABC transporter ATP-binding protein rbh
seg (db=Seg db_id=seg from=110 to=122)
seg (db=Seg db_id=seg from=144 to=159)
seg (db=Seg db_id=seg from=171 to=189)
CARPRO_1_50
Propionibacterium sp. KPL2005, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(50107..50781)
DNA (675bp) protein (225aa)
seg (db=Seg db_id=seg from=11 to=23)
Uncharacterized protein {ECO:0000313|EMBL:ERS23001.1}; TaxID=1203633 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium sp. KP
CARPRO_1_51
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(50870..51214)
DNA (345bp) protein (115aa)
Toxin-antitoxin system, antitoxin component, ArsR family protein
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=9 to=113 evalue=8.9e-23)
no description (db=HMMSmart db_id=SM00418 from=31 to=111 evalue=3.8e-19 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=17 to=112 evalue=2.7e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
CARPRO_1_52
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51310..51720
DNA (411bp) protein (137aa)
Arsenical resistance operon trans-acting repressor ArsD
Arsenical resistance operon trans-acting repressor ArsD n=1 Tax=Propionibacterium acnes HL044PA1 RepID=E4HMZ6_PROAA (db=UNIREF evalue=8.0e-33 bit_score=142.0 identity=60.84 coverage=98.5401459854015)
seg (db=Seg db_id=seg from=75 to=85)
(db=HMMPfam db_id=PF06953 from=1 to=126 evalue=1.5e-41 interpro_id=IPR010712 interpro_description=Arsenical-resistance operon trans-acting repressor ArsD GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892), Biological Process: response to arsenic-containing substance (GO:0046685))
CARPRO_1_53
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51747..53516
DNA (1770bp) protein (590aa)
arsenite-activated ATPase ArsA rbh
arsenite-activated ATPase ArsA rbh
Arsenite-transporting ATPase n=2 Tax=Actinomycetales RepID=E4HMZ7_PROAA (db=UNIREF evalue=0.0 bit_score=744.0 identity=68.72 coverage=98.6440677966102)
seg (db=Seg db_id=seg from=329 to=348)
CARPRO_1_54
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

53698..54252
DNA (555bp) protein (185aa)
hypothetical protein
seg (db=Seg db_id=seg from=6 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein n=3 Tax=Propionibacterium avidum RepID=M9VAQ1_9ACTO
CARPRO_1_55
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54580..55704
DNA (1125bp) protein (375aa)
putative lysophospholipase
putative lysophospholipase
Hydrolase, alpha/beta fold family protein n=4 Tax=Propionibacterium RepID=E4AFN4_PROAA (db=UNIREF evalue=0.0 bit_score=681.0 identity=87.97 coverage=99.4666666666667)
G3DSA:3.40.50.1820 (db=Gene3D db_id=G3DSA:3.40.50.1820 from=277 to=374 evalue=6.29999999999997e-51)
CARPRO_1_56
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

55894..57387
DNA (1494bp) protein (498aa)
hypothetical protein
hypothetical protein
Polysaccharide deacetylase n=69 Tax=Propionibacterium RepID=D4HAZ9_PROAS (db=UNIREF evalue=0.0 bit_score=841.0 identity=84.1 coverage=99.5983935742972)
seg (db=Seg db_id=seg from=37 to=45)
CARPRO_1_57
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57384..58250
DNA (867bp) protein (289aa)
hypothetical protein
hypothetical protein
TIGR03943 family protein n=65 Tax=Propionibacterium RepID=F5TSZ7_9ACTO (db=UNIREF evalue=9.0e-129 bit_score=463.0 identity=85.07 coverage=98.6159169550173)
TIGR03943 (db=HMMTigr db_id=TIGR03943 from=28 to=287 evalue=6.09999999999996e-39 interpro_id=IPR015402 interpro_description=Protein of unknown function DUF1980)
CARPRO_1_58
Propionibacterium avidum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

58247..59179
DNA (933bp) protein (311aa)
hypothetical protein
hypothetical protein
Conserved mebrane protein, predicted permease n=73 Tax=Propionibacterium RepID=Q6A5W1_PROAC (db=UNIREF evalue=7.0e-112 bit_score=407.0 identity=86.45 coverage=98.3922829581994)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
CARPRO_1_59
Propionibacterium sp. KPL1852, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

59335..60894
DNA (1560bp) protein (520aa)
protein YjeA rbh
protein YjeA rbh
Polysaccharide deacetylase n=4 Tax=Propionibacterium RepID=F3P3R0_9ACTO (db=UNIREF evalue=0.0 bit_score=816.0 identity=81.59 coverage=99.0384615384615)
seg (db=Seg db_id=seg from=34 to=47)
CARPRO_1_60
Propionibacterium sp. KPL1838, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60980..62800)
DNA (1821bp) protein (607aa)
membrane protein, MviN-like protein
membrane protein, MviN-like protein
Conserved membrane protein, MviN-like protein n=74 Tax=Propionibacterium RepID=Q6A5V9_PROAC (db=UNIREF evalue=0.0 bit_score=945.0 identity=86.02 coverage=99.670510708402)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=114)
Displaying items 31-60 of 234 in total

View Taxonomy