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ACD20_160

Alias: ACD20_17814.31984.15

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_160_1

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comp(246..1088)
DNA (843bp) protein (281aa)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMH4_9FIRM (db=UNIREF evalue=4.0e-57 bit_score=224.0 identity=43.37 coverage=95.0177935943061)
ksgA; putative ribosomal RNA small subunit methyltransferase A (EC:2.1.1.182)
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=42 to=69 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ksgA: dimethyladenosine transferase (db=HMMTigr db_id=TIGR00755 from=10 to=275 evalue=1.8e-90 interpro_id=IPR011530 interpro_description=Ribosomal RNA adenine dimethylase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433))
ACD20_160_2

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1125..2549
DNA (1425bp) protein (475aa)
Glutamate--cysteine ligase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBM5_SORC5 (db=UNIREF evalue=1.0e-84 bit_score=317.0 identity=37.44 coverage=91.5789473684211)
glutamate--cysteine ligase, plant type
glutamate--cysteine ligase, plant type
GCS2 (db=HMMPfam db_id=PF04107 from=87 to=377 evalue=5.7e-55 interpro_id=IPR006336 interpro_description=Glutamate--cysteine ligase, GCS2 GO=Molecular Function: glutamate-cysteine ligase activity (GO:0004357), Biological Process: glutathione biosynthetic process (GO:0006750))
ACD20_160_3

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2551..3537
DNA (987bp) protein (329aa)
spermine synthase
seg (db=Seg db_id=seg from=307 to=318)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=30 to=233 evalue=3.0e-38)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=68 to=237 evalue=2.6e-27)
ACD20_160_4

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3637..5754
DNA (2118bp) protein (706aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GQW7_SORC5 (db=UNIREF evalue=2.0e-90 bit_score=337.0 identity=34.8 coverage=83.28611898017)
coiled-coil (db=Coil db_id=coil from=264 to=285 evalue=NA)
ACD20_160_5

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6118..6885
DNA (768bp) protein (256aa)
fliP; flagellar biosynthetic protein FliP
transmembrane_regions (db=TMHMM db_id=tmhmm from=200 to=222)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
ACD20_160_6

Not on your lists

6904..7173
DNA (270bp) protein (90aa)
fliQ; flagellar biosynthetic protein FliQ
seg (db=Seg db_id=seg from=55 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD20_160_7

Not on your lists

7192..7977
DNA (786bp) protein (262aa)
flagellar biosynthesis protein FliR
Flagellar biosynthetic protein fliR n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN22_9FIRM (db=UNIREF evalue=1.0e-33 bit_score=146.0 identity=38.57 coverage=84.3511450381679)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=195 to=206)
ACD20_160_8

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7989..9056
DNA (1068bp) protein (356aa)
flagellar biosynthetic protein FlhB
Flagellar biosynthetic protein FlhB n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVX4_9BACL (db=UNIREF evalue=1.0e-63 bit_score=246.0 identity=42.3 coverage=91.8539325842697)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
seg (db=Seg db_id=seg from=333 to=347)
ACD20_160_9

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9056..11161
DNA (2106bp) protein (702aa)
flagellar biosynthesis protein FlhA
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA n=1 Tax=Thermincola sp. JR RepID=D5XFF4_9FIRM (db=UNIREF evalue=5.0e-176 bit_score=621.0 identity=52.55 coverage=96.1538461538462)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
ACD20_160_10

Not on your lists

comp(11477..12028)
DNA (552bp) protein (184aa)
coiled-coil (db=Coil db_id=coil from=91 to=112 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04249.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_11

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12375..12872
DNA (498bp) protein (166aa)
seg (db=Seg db_id=seg from=76 to=98)
seg (db=Seg db_id=seg from=130 to=161)
Uncharacterized protein {ECO:0000313|EMBL:EKE04250.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_12

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13236..14561
DNA (1326bp) protein (442aa)
trans-sialidase (db=KEGG evalue=1.0e-11 bit_score=74.7 identity=43.8 coverage=29.6380090497738)
seg (db=Seg db_id=seg from=417 to=432)
seg (db=Seg db_id=seg from=379 to=412)
seg (db=Seg db_id=seg from=278 to=290)
ACD20_160_13

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comp(14631..15008)
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=16 to=31)
seg (db=Seg db_id=seg from=104 to=117)
Uncharacterized protein {ECO:0000313|EMBL:EKE04223.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_14

Not on your lists

comp(15282..16019)
DNA (738bp) protein (246aa)
pyridoxine 5'-phosphate synthase
seg (db=Seg db_id=seg from=172 to=185)
seg (db=Seg db_id=seg from=26 to=40)
pdxJ: pyridoxine 5'-phosphate synthase (db=HMMTigr db_id=TIGR00559 from=3 to=238 evalue=2.5e-123 interpro_id=IPR004569 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyridoxine biosynthetic process (GO:0008615))
ACD20_160_15

Not on your lists

comp(16246..16869)
DNA (624bp) protein (208aa)
seg (db=Seg db_id=seg from=148 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=85 to=195 evalue=2.0e-12 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
HSP20 (db=HMMPfam db_id=PF00011 from=101 to=191 evalue=1.5e-09 interpro_id=IPR002068 interpro_description=Heat shock protein Hsp20)
ACD20_160_16

Not on your lists

comp(16975..20013)
DNA (3039bp) protein (1013aa)
histidine kinase with GAF domain
seg (db=Seg db_id=seg from=2 to=10)
coiled-coil (db=Coil db_id=coil from=196 to=217 evalue=NA)
coiled-coil (db=Coil db_id=coil from=21 to=45 evalue=NA)
ACD20_160_17

Not on your lists

comp(20192..20620)
DNA (429bp) protein (143aa)
MerR family transcriptional regulator
HTH_MERR_1 (db=PatternScan db_id=PS00552 from=27 to=49 evalue=0.0 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=24 to=133 evalue=2.8e-15 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
no description (db=HMMSmart db_id=SM00422 from=24 to=93 evalue=7.2e-15 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_160_18

Not on your lists

comp(20870..21469)
DNA (600bp) protein (200aa)
20870..21469 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04228.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_19

Not on your lists

21719..23371
DNA (1653bp) protein (551aa)
SLEI family protein n=2 Tax=Tetrahymena thermophila SB210 RepID=Q22AU4_TETTH (db=UNIREF evalue=7.0e-30 bit_score=135.0 identity=26.17 coverage=90.3811252268603)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=5 to=26)
ACD20_160_20

Not on your lists


comp(23469..23900)
DNA (432bp) protein (144aa)
rpsP; 30S ribosomal protein S16
seg (db=Seg db_id=seg from=121 to=143)
seg (db=Seg db_id=seg from=92 to=113)
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=2 to=77 evalue=4.4e-35 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_160_21

Not on your lists

comp(23994..24929)
DNA (936bp) protein (312aa)
Radical SAM domain-containing protein
Radical SAM domain-containing protein
Radical SAM domain protein n=4 Tax=Thermotogaceae RepID=A5IKT5_THEP1 (db=UNIREF evalue=5.0e-100 bit_score=367.0 identity=58.52 coverage=98.0769230769231)
seg (db=Seg db_id=seg from=142 to=153)
ACD20_160_22

Not on your lists

comp(24933..25823)
DNA (891bp) protein (297aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
seg (db=Seg db_id=seg from=7 to=20)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=296 evalue=4.9e-35)
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=5 to=27 evalue=6.6e-29 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD20_160_23

Not on your lists

comp(25820..26479)
DNA (660bp) protein (220aa)
isochorismatase hydrolase
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=37 to=215 evalue=2.5e-47 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=38 to=212 evalue=5.9e-47 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Isochorismatase (db=HMMPfam db_id=PF00857 from=38 to=208 evalue=3.2e-45 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD20_160_24

Not on your lists

26622..26909
DNA (288bp) protein (96aa)
26622..26909 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04234.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_25

Not on your lists

comp(27084..27371)
DNA (288bp) protein (96aa)
27084..27371 - (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04235.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_26

Not on your lists

27677..28513
DNA (837bp) protein (279aa)
seg (db=Seg db_id=seg from=216 to=240)
seg (db=Seg db_id=seg from=35 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=243)
Uncharacterized protein {ECO:0000313|EMBL:EKE04236.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_160_27

Not on your lists

28595..29860
DNA (1266bp) protein (422aa)
competence-damage inducible protein
competence-damage inducible protein
CinA-like protein n=2 Tax=Dictyoglomus RepID=CINAL_DICT6 (db=UNIREF evalue=4.0e-92 bit_score=342.0 identity=48.31 coverage=95.7345971563981)
seg (db=Seg db_id=seg from=352 to=372)
ACD20_160_28

Not on your lists

29897..30154
DNA (258bp) protein (86aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=78)
seg (db=Seg db_id=seg from=35 to=53)
ACD20_160_29

Not on your lists

comp(30211..31911)
DNA (1701bp) protein (567aa)
sulfate transporter
sulfate transporter
Sulphate transporter n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U354_9DELT (db=UNIREF evalue=7.0e-103 bit_score=378.0 identity=49.35 coverage=94.1798941798942)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
Displaying 29 items

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