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rifcsphigho2_02_scaffold_3326

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_3326_1
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(3..992)
-----------------
DNA (990bp)
protein (330aa)
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] id=5091132 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
rifcsphigho2_02_scaffold_3326_2
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(995..2311)
-----------------
DNA (1317bp)
protein (439aa)
aspartate kinase (EC:2.7.2.4) Tax=RBG_16_Planctomycetes_59_8_curated
aspartate kinase (EC:2.7.2.4)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI0003791EAE
rifcsphigho2_02_scaffold_3326_3
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2308..3483)
-----------------
DNA (1176bp)
protein (392aa)
Similar to N-succinyldiaminopimelate aminotransferase {ECO:0000313|EMBL:CAJ74692.1}; EC=2.6.1.17 {ECO:0000313|EMBL:CAJ74692.1};; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candida
Similar to N-succinyldiaminopimelate aminotransferase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3U7_9BACT
diaminopimelate aminotransferase
rifcsphigho2_02_scaffold_3326_4
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3490..4752)
-----------------
DNA (1263bp)
protein (421aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSR9_METAC
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
rifcsphigho2_02_scaffold_3326_5
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(4754..5632)
-----------------
DNA (879bp)
protein (293aa)
Dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=RBG_16_Spirochaete_67_19_curated
Dihydrodipicolinate synthase (EC:4.3.3.7)
Dihydrodipicolinate synthase n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WFI0_9SPIO
rifcsphigho2_02_scaffold_3326_6
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(5625..6386)
-----------------
DNA (762bp)
protein (254aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=CG_Woesearch_03
dapB; Dihydrodipicolinate reductase (EC:1.3.1.26)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI000373A4F5
rifcsphigho2_02_scaffold_3326_7
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6458..7114
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003645D7C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK80590.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 /
rifcsphigho2_02_scaffold_3326_8
Candidatus Babela massiliensis, Candidatus Babela, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7525..7740)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein n=1 Tax=delta proteobacterium BABL1 RepID=V6DJL0_9DELT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDK30701.1}; TaxID=673862 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Babela.;" source="Candidatus Babela massiliensis.;"
rifcsphigho2_02_scaffold_3326_9
AR11, Woesearchaeaota, DPANN, Archaea

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7874..8704
-----------------
DNA (831bp)
protein (277aa)
hypothetical protein Tax=AR11
id=5046759 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_3326_10
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

8706..9239
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein Tax=AR11
rifcsphigho2_02_scaffold_3326_11
Desulfurobacterium thermolithotrophum, Desulfurobacterium, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(9241..9996)
-----------------
DNA (756bp)
protein (252aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
Triosephosphate isomerase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S313_DESTD
rifcsphigho2_02_scaffold_3326_12
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10001..10687)
-----------------
DNA (687bp)
protein (229aa)
Integral membrane protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B1R5_9FIRM
Integral membrane protein {ECO:0000313|EMBL:EGG87805.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
Integral membrane protein
rifcsphigho2_02_scaffold_3326_13
unknown

Not on your lists

comp(10689..11096)
-----------------
DNA (408bp)
protein (136aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3326_14
unknown

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comp(11098..11253)
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3326_15
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(11312..11635)
-----------------
DNA (324bp)
protein (108aa)
Thioredoxin n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z8L2_DEHE1
thioredoxin; K03671 thioredoxin 1 Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
thioredoxin
rifcsphigho2_02_scaffold_3326_16

Not on your lists

comp(11668..12168)
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI0003716170
Marine sediment metagenome DNA, contig: S03H2_C00951 {ECO:0000313|EMBL:GAH27123.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
rifcsphigho2_02_scaffold_3326_17
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12451..12663)
-----------------
DNA (213bp)
protein (71aa)
hypothetical protein Tax=AR11
id=5044625 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_3326_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12668..13237)
-----------------
DNA (570bp)
protein (190aa)
hypothetical protein Tax=AR11
rifcsphigho2_02_scaffold_3326_19

Not on your lists


13449..13982
-----------------
DNA (534bp)
protein (178aa)
Ribosomal protein L16 {ECO:0000313|EMBL:KHO51722.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L10e id=5800536 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L10e
rifcsphigho2_02_scaffold_3326_20
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

14045..15094
-----------------
DNA (1050bp)
protein (350aa)
hypothetical protein, partial n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003804E87
mechanosensitive ion channel MscS Tax=CG_Pacearch_01
MscS mechanosensitive ion channel
rifcsphigho2_02_scaffold_3326_21
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(15099..17636)
-----------------
DNA (2538bp)
protein (846aa)
PGAP1 family protein Tax=AR11
PGAP1 family protein id=5799748 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PGAP1 family protein
rifcsphigho2_02_scaffold_3326_22
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

17929..19620
-----------------
DNA (1692bp)
protein (564aa)
Uncharacterized protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VQA2_9DELT
transporter, CPA2 family; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=AR11
sodium:proton antiporter
rifcsphigho2_02_scaffold_3326_23
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists


19756..20238
-----------------
DNA (483bp)
protein (161aa)
30S ribosomal protein S6e; K02991 small subunit ribosomal protein S6e Tax=GWA2_WOR_2_47_8_curated
SSU ribosomal protein S6E id=5799714 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein S6e
rifcsphigho2_02_scaffold_3326_24

Not on your lists


20306..21586
-----------------
DNA (1281bp)
protein (427aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO51155.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Translation initiation factor 2 subunit gamma id=5800779 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 2 subunit gamma
rifcsphigho2_02_scaffold_3326_25
unknown

Not on your lists

21646..21975
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsphigho2_02_scaffold_3326_26
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

comp(21976..22500)
-----------------
DNA (525bp)
protein (175aa)
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3730988 bin=GWF2_Nitrospirae_44_13 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rifcsphigho2_02_scaffold_3326_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22567..23088
-----------------
DNA (522bp)
protein (174aa)
translation initiation factor, aIF-2BI family (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=GWF2_RBX1_38_17_curated
Putative methylthioribose-1-phosphate isomerase id=2119466 bin=GWE2_RBX1_39_32 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
translation initiation factor IF-2B subunit alpha
rifcsphigho2_02_scaffold_3326_28
R_Nitrospirae_40_19, Nitrospirae, Bacteria

Not on your lists

23069..23602
-----------------
DNA (534bp)
protein (178aa)
translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFG7_ACIB4
translation initiation factor IF-2B subunit alpha; K03239 translation initiation factor eIF-2B subunit alpha Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
rifcsphigho2_02_scaffold_3326_29
R_Nitrospirae_40_19, Nitrospirae, Bacteria

Not on your lists

23641..24426
-----------------
DNA (786bp)
protein (262aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-); K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-] Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
Fructose-bisphosphate aldolase id=1873959 bin=GWB2_Nitrospirae_rel_47_37 species=Thermoplasmatales archaeon SCGC AB-539-N05 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
lsrF; putative aldolase
Displaying 29 items

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