ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 79401-79450 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_168415 Species: Sphingomonas taxi (100%)	2	1168 bp	64.90	2.44	100.17
scnpilot_cont_500_p_scaffold_74415 Species: Oligotropha carboxidovorans (50%)	2	1168 bp	64.90	3.34	100.17
scnpilot_cont_500_p_scaffold_74662 Species: Bosea sp. LC85 (100%)	2	1165 bp	67.90	1.80	100.17
scnpilot_cont_500_p_scaffold_75530 Species: Polysphondylium pallidum (50%)	2	1156 bp	46.54	4.54	100.17
scnpilot_cont_500_p_scaffold_75595 Species: Pontibacter korlensis (50%)	2	1156 bp	42.82	1.82	100.17
scnpilot_cont_500_p_scaffold_75603 Species: Devosia soli (100%)	2	1156 bp	49.22	1.30	100.17
scnpilot_cont_500_p_scaffold_75878 Species: Bradyrhizobium sp. ORS 278 (50%)	2	1153 bp	69.82	3.12	100.17
scnpilot_cont_500_p_scaffold_76112 Species: Bradyrhizobium sp. LTSP885 (50%)	2	1150 bp	69.48	3.39	100.17
scnpilot_cont_500_p_scaffold_76135 Species: Bosea sp. LC85 (100%)	2	1150 bp	65.30	1.83	100.17
scnpilot_cont_500_p_scaffold_76137 Species: Kribbella flavida (50%)	2	1150 bp	71.22	1.57	100.17
scnpilot_cont_500_p_scaffold_76156	3	1150 bp	58.96	6.39	100.17
scnpilot_cont_500_p_scaffold_76466 Species: Pseudonocardia dioxanivorans (100%)	2	1147 bp	68.70	3.14	100.17
scnpilot_cont_500_p_scaffold_141143	2	1147 bp	56.32	14.78	100.17
scnpilot_cont_500_p_scaffold_40898 Species: Microbacterium mangrovi (100%)	2	1719 bp	71.79	3.05	100.18
scnpilot_cont_500_p_scaffold_76679 Species: Bradyrhizobium sp. ORS 375 (50%)	2	1144 bp	61.28	1.57	100.18
scnpilot_cont_500_p_scaffold_76697 Species: Sphaerobacter thermophilus (50%)	2	1144 bp	64.51	1.97	100.18
scnpilot_cont_500_p_scaffold_76721 Species: Sphingomonas taxi (50%)	2	1144 bp	72.47	3.41	100.18
scnpilot_cont_500_p_scaffold_77013 Species: Hyphomicrobium denitrificans (100%)	2	1141 bp	62.40	2.10	100.18
scnpilot_cont_500_p_scaffold_77352 Species: Novosphingobium sp. P6W (50%)	2	1138 bp	60.02	1.58	100.18
scnpilot_cont_500_p_scaffold_77366 Species: Rhizobium tropici (100%)	2	1138 bp	62.39	5.01	100.18
scnpilot_cont_500_p_scaffold_41378 Phylum: Proteobacteria (66.67%)	3	1707 bp	67.19	4.31	100.18
scnpilot_cont_500_p_scaffold_77591 Species: Microbacterium testaceum (100%)	2	1135 bp	71.81	2.11	100.18
scnpilot_cont_500_p_scaffold_77595 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)	2	1135 bp	55.42	1.06	100.18
scnpilot_cont_500_p_scaffold_77987 Species: Oligotropha carboxidovorans (100%)	2	1132 bp	68.29	1.86	100.18
scnpilot_cont_500_p_scaffold_78000 Species: Rhodanobacter spathiphylli (50%)	2	1132 bp	71.47	2.92	100.18
scnpilot_cont_500_p_scaffold_78024 Species: Nitrobacter sp. Nb-311A (100%)	2	1132 bp	68.46	1.59	100.18
scnpilot_cont_500_p_scaffold_78297 Species: Sinorhizobium sp. LM21 (100%)	2	1129 bp	64.84	1.06	100.18
scnpilot_cont_500_p_scaffold_78330	2	1129 bp	60.23	2.92	100.18
scnpilot_cont_500_p_scaffold_78278 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1129 bp	66.34	1.59	100.18
scnpilot_cont_500_p_scaffold_42077 Species: CG_PER_01 (50%)	2	1689 bp	69.86	1.95	100.18
scnpilot_cont_500_p_scaffold_78540 Species: Microbacterium testaceum (100%)	2	1126 bp	71.05	1.60	100.18
scnpilot_cont_500_p_scaffold_78891 Species: Methylophaga nitratireducenticrescens (50%)	2	1123 bp	71.50	2.80	100.18
scnpilot_cont_500_p_scaffold_78901 Species: Microbacterium testaceum (100%)	2	1123 bp	72.48	1.87	100.18
scnpilot_cont_500_p_scaffold_79215 Species: Strongylocentrotus purpuratus (50%)	2	1120 bp	47.41	2.54	100.18
scnpilot_cont_500_p_scaffold_79477 Species: Thauera phenylacetica (50%)	2	1117 bp	68.13	1.88	100.18
scnpilot_cont_500_p_scaffold_42669 Species: Acidovorax ebreus (50%)	2	1674 bp	71.15	2.60	100.18
scnpilot_cont_500_p_scaffold_80128 Species: Rhizobium sp. LPU83 (50%)	2	1111 bp	63.91	4.59	100.18
scnpilot_cont_500_p_scaffold_43068 Species: Devosia limi (50%)	2	1665 bp	66.55	3.24	100.18
scnpilot_cont_500_p_scaffold_43077 Species: Moorella glycerini (50%)	2	1665 bp	60.24	3.24	100.18
scnpilot_cont_500_p_scaffold_18895	3	2773 bp	55.86	11.41	100.18
scnpilot_cont_500_p_scaffold_80482 Species: Verminephrobacter eiseniae (50%)	2	1108 bp	72.11	1.62	100.18
scnpilot_cont_500_p_scaffold_80490 Species: Nakamurella multipartita (50%)	2	1108 bp	72.20	1.08	100.18
scnpilot_cont_500_p_scaffold_80537 Species: Microbacterium sp. C448 (50%)	2	1108 bp	75.99	2.17	100.18
scnpilot_cont_500_p_scaffold_43210 Species: Variovorax sp. CF313 (100%)	2	1662 bp	72.20	1.26	100.18
scnpilot_cont_500_p_scaffold_80783 Species: Rhodococcus opacus (50%)	2	1105 bp	71.58	2.44	100.18
scnpilot_cont_500_p_scaffold_80784 Species: Rhodanobacter thiooxydans (100%)	2	1105 bp	67.15	2.31	100.18
scnpilot_cont_500_p_scaffold_80787 Species: Variovorax paradoxus (50%)	2	1105 bp	69.14	2.44	100.18
scnpilot_cont_500_p_scaffold_81088 Species: Hyphomicrobium sp. MC1 (50%)	2	1102 bp	57.35	3.81	100.18
scnpilot_cont_500_p_scaffold_81155 Species: Caulobacter sp. K31 (50%)	2	1102 bp	69.06	1.77	100.18
scnpilot_cont_500_p_scaffold_81419 Species: Acidovorax sp. MR-S7 (100%)	2	1099 bp	67.52	2.87	100.18

Displaying items 79401-79450 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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