ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 79551-79600 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_31545 Species: Pseudomonas aeruginosa (50%)	2	2024 bp	61.46	2.96	100.20
scnpilot_cont_500_p_scaffold_16483 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	3033 bp	58.33	7.81	100.20
scnpilot_cont_500_p_scaffold_49884 Species: Sphaerobacter thermophilus (50%)	2	1515 bp	72.28	2.08	100.20
scnpilot_cont_500_p_scaffold_92389	2	1009 bp	49.65	1.19	100.20
scnpilot_cont_500_p_scaffold_92354 Species: Sinorhizobium americanum (50%)	2	1009 bp	67.59	2.38	100.20
scnpilot_cont_500_p_scaffold_92374 Species: Methylobacterium extorquens (50%)	2	1009 bp	63.43	1.19	100.20
scnpilot_cont_500_p_scaffold_50020 Species: Hyphomicrobium denitrificans (100%)	2	1512 bp	62.37	1.88	100.20
scnpilot_cont_500_p_scaffold_92845 Species: Rhodanobacter thiooxydans (50%)	2	1006 bp	69.28	2.39	100.20
scnpilot_cont_500_p_scaffold_50187 Species: Sphingomonas paucimobilis (50%)	2	1509 bp	69.58	3.38	100.20
scnpilot_cont_500_p_scaffold_50336	2	1506 bp	56.04	7.87	100.20
scnpilot_cont_500_p_scaffold_50363 Species: Nitrobacter hamburgensis (100%)	2	1506 bp	64.81	2.29	100.20
scnpilot_cont_500_p_scaffold_93226 Species: Sphingomonas sp. WHSC-8 (100%)	2	1003 bp	69.19	1.50	100.20
scnpilot_cont_500_p_scaffold_93283 Species: Hyphomicrobium denitrificans (100%)	2	1003 bp	59.22	2.09	100.20
scnpilot_cont_500_p_scaffold_50532 Species: Arthrobacter siccitolerans (50%)	2	1503 bp	73.39	4.09	100.20
scnpilot_cont_500_p_scaffold_93619 Species: Bosea sp. LC85 (50%)	2	1000 bp	69.50	1.00	100.20
scnpilot_cont_500_p_scaffold_93640 Species: Nakamurella multipartita (100%)	2	1000 bp	75.70	1.50	100.20
scnpilot_cont_500_p_scaffold_93696 Species: Burkholderia pseudomallei (50%)	2	1000 bp	66.70	2.40	100.20
scnpilot_cont_500_p_scaffold_93703 Species: R_Betaproteobacteria_65_24 (50%)	2	1000 bp	64.50	1.80	100.20
scnpilot_cont_500_p_scaffold_93719 Species: marine actinobacterium PHSC20C1 (50%)	2	1000 bp	69.80	2.10	100.20
scnpilot_cont_500_p_scaffold_93613 Species: Afipia sp. 1NLS2 (50%)	2	1000 bp	71.40	1.50	100.20
scnpilot_cont_500_p_scaffold_51175 Species: Methylobacterium nodulans (50%)	2	1491 bp	72.50	3.02	100.20
scnpilot_cont_500_p_scaffold_51477 Species: Bradyrhizobium japonicum (50%)	2	1485 bp	58.72	2.32	100.20
scnpilot_cont_500_p_scaffold_51626 Species: Candidatus Caedibacter acanthamoebae (100%)	2	1482 bp	37.92	1.21	100.20
scnpilot_cont_500_p_scaffold_32801 Species: Acanthamoeba castellanii (66.67%)	3	1976 bp	54.25	7.89	100.20
scnpilot_cont_500_p_scaffold_8315 Species: Thermobaculum terrenum (66.67%)	3	4925 bp	48.59	3.87	100.20
scnpilot_cont_500_p_scaffold_51979 Species: Xanthomonas oryzae (50%)	2	1476 bp	69.11	1.83	100.20
scnpilot_cont_500_p_scaffold_23197 Species: Nitrobacter winogradskyi (100%)	3	2440 bp	61.72	2.89	100.21
scnpilot_cont_500_p_scaffold_52695 Species: R_Alphaproteobacteria_66_14 (100%)	2	1464 bp	69.81	2.25	100.21
scnpilot_cont_500_p_scaffold_33454 Species: Afipia felis (100%)	2	1952 bp	65.11	3.07	100.21
scnpilot_cont_500_p_scaffold_33462 Genus: Sphingomonas (50%)	4	1952 bp	67.11	2.15	100.21
scnpilot_cont_500_p_scaffold_23246 Class: Alphaproteobacteria (100%)	4	2437 bp	69.14	3.08	100.21
scnpilot_cont_500_p_scaffold_53047 Species: R_Alphaproteobacteria_66_14 (50%)	2	1458 bp	66.46	3.60	100.21
scnpilot_cont_500_p_scaffold_33738 Species: Novosphingobium sp. MD-1 (50%)	2	1943 bp	65.67	2.78	100.21
scnpilot_cont_500_p_scaffold_53379 Species: Rhodanobacter fulvus (50%)	2	1452 bp	71.69	2.27	100.21
scnpilot_cont_500_p_scaffold_53526 Species: Microbacterium testaceum (50%)	2	1449 bp	69.57	1.66	100.21
scnpilot_cont_500_p_scaffold_34376 Species: Mesorhizobium opportunistum (100%)	2	1919 bp	63.11	3.28	100.21
scnpilot_cont_500_p_scaffold_34649 Species: Rhodanobacter fulvus (100%)	4	1910 bp	68.69	2.75	100.21
scnpilot_cont_500_p_scaffold_54753 Species: Acidithiobacillus ferrivorans (50%)	2	1428 bp	68.84	4.10	100.21
scnpilot_cont_500_p_scaffold_29103 Species: Paracoccus versutus (75%)	4	4278 bp	65.10	3.33	100.21
scnpilot_cont_500_p_scaffold_55248 Species: Microbacterium testaceum (100%)	2	1419 bp	70.54	1.80	100.21
scnpilot_cont_500_p_scaffold_35256 Order: Sphingomonadales (100%)	3	1889 bp	67.97	3.10	100.21
scnpilot_cont_500_p_scaffold_55437 Species: Rhizobium tropici (100%)	2	1416 bp	61.44	1.91	100.21
scnpilot_cont_500_p_scaffold_55608	3	1413 bp	67.09	2.76	100.21
scnpilot_cont_500_p_scaffold_55780 Species: Microbacterium azadirachtae (50%)	2	1410 bp	78.16	3.83	100.21
scnpilot_cont_500_p_scaffold_35742 Order: Rhodobacterales (66.67%)	3	1874 bp	70.60	2.40	100.21
scnpilot_cont_500_p_scaffold_35753 Species: Nitrobacter sp. Nb-311A (100%)	3	1874 bp	66.81	5.04	100.21
scnpilot_cont_500_p_scaffold_57032 Species: Bosea sp. LC85 (100%)	2	1389 bp	70.05	1.30	100.22
scnpilot_cont_500_p_scaffold_57436 Species: Microbacterium ginsengisoli (50%)	2	1383 bp	67.61	3.58	100.22
scnpilot_cont_500_p_scaffold_57627 Species: Pandoraea sp. SD6-2 (100%)	2	1380 bp	66.96	2.61	100.22
scnpilot_cont_500_p_scaffold_36993 Order: Rhodospirillales (100%)	3	1835 bp	73.57	1.31	100.22

Displaying items 79551-79600 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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