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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 79501-79550 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_86800 2 1054 bp 55.98 2.42 100.19
scnpilot_cont_500_p_scaffold_86827
Species: Sphingomonas taxi (100%)
2 1054 bp 70.11 2.42 100.19
scnpilot_cont_500_p_scaffold_86834
Species: Rhizobium sp. AP16 (50%)
2 1054 bp 65.18 3.27 100.19
scnpilot_cont_500_p_scaffold_46673
Species: Burkholderia sp. lig30 (50%)
2 1581 bp 63.82 2.18 100.19
scnpilot_cont_500_p_scaffold_87157
Species: Devosia sp. LC5 (50%)
2 1051 bp 62.51 2.85 100.19
scnpilot_cont_500_p_scaffold_87193
Species: Microbacterium laevaniformans (50%)
2 1051 bp 75.93 2.85 100.19
scnpilot_cont_500_p_scaffold_46944
Order: Kinetoplastida (50%)
4 1575 bp 52.25 2.86 100.19
scnpilot_cont_500_p_scaffold_47091
Species: Mesorhizobium metallidurans (50%)
2 1572 bp 66.48 1.91 100.19
scnpilot_cont_500_p_scaffold_87449
Species: Nitrobacter hamburgensis (100%)
2 1048 bp 62.60 3.44 100.19
scnpilot_cont_500_p_scaffold_87463
Species: Rhizobium freirei (50%)
2 1048 bp 67.37 1.72 100.19
scnpilot_cont_500_p_scaffold_87478
Species: Ochrobactrum sp. CDB2 (50%)
2 1048 bp 67.37 2.15 100.19
scnpilot_cont_500_p_scaffold_87893
Species: Devosia sp. 17-2-E-8 (50%)
2 1045 bp 67.27 2.58 100.19
scnpilot_cont_500_p_scaffold_47352
Species: Burkholderia fungorum (50%)
2 1566 bp 62.01 1.72 100.19
scnpilot_cont_500_p_scaffold_47499
Species: Legionella pneumophila (100%)
2 1563 bp 42.55 2.69 100.19
scnpilot_cont_500_p_scaffold_88170
Species: Hyphomicrobium denitrificans (100%)
2 1042 bp 62.76 2.30 100.19
scnpilot_cont_500_p_scaffold_88541
Species: Methylocystis sp. SC2 (50%)
2 1039 bp 61.98 1.44 100.19
scnpilot_cont_500_p_scaffold_88548 2 1039 bp 62.27 1.44 100.19
scnpilot_cont_500_p_scaffold_88566
Species: Pseudomonas sp. M1 (50%)
2 1039 bp 68.14 1.73 100.19
scnpilot_cont_500_p_scaffold_88586
Species: Oceanibaculum indicum (50%)
2 1039 bp 61.79 1.88 100.19
scnpilot_cont_500_p_scaffold_88604
Species: Agrobacterium tumefaciens (100%)
2 1039 bp 65.54 2.02 100.19
scnpilot_cont_500_p_scaffold_88621
Species: Oceanibaculum indicum (50%)
2 1039 bp 59.19 3.18 100.19
scnpilot_cont_500_p_scaffold_47788
Species: Rhizobium freirei (50%)
2 1557 bp 67.12 4.91 100.19
scnpilot_cont_500_p_scaffold_47892
Species: Rhizobium tropici (100%)
2 1554 bp 65.89 2.12 100.19
scnpilot_cont_500_p_scaffold_21017
Class: Alphaproteobacteria (66.67%)
3 2590 bp 69.73 2.55 100.19
scnpilot_cont_500_p_scaffold_88873
Species: Rhodococcus sp. MEB064 (50%)
2 1036 bp 52.99 1.45 100.19
scnpilot_cont_500_p_scaffold_88882
Species: Legionella longbeachae (50%)
2 1036 bp 41.31 2.17 100.19
scnpilot_cont_500_p_scaffold_48057
Species: Labrenzia aggregata (50%)
2 1551 bp 67.83 2.32 100.19
scnpilot_cont_500_p_scaffold_89279
Species: Bosea sp. LC85 (100%)
2 1033 bp 72.70 1.45 100.19
scnpilot_cont_500_p_scaffold_89324
Species: Xanthobacter autotrophicus (50%)
2 1033 bp 70.76 1.74 100.19
scnpilot_cont_500_p_scaffold_89330
Species: Burkholderia sp. 2002721687 (50%)
2 1033 bp 71.54 1.60 100.19
scnpilot_cont_500_p_scaffold_89649
Species: Actinomyces massiliensis (50%)
2 1030 bp 72.72 1.17 100.19
scnpilot_cont_500_p_scaffold_89650
Species: Nitratireductor indicus (50%)
2 1030 bp 63.59 2.33 100.19
scnpilot_cont_500_p_scaffold_89672
Species: Thauera sp. MZ1T (50%)
2 1030 bp 66.70 1.75 100.19
scnpilot_cont_500_p_scaffold_89673
Species: Achromobacter xylosoxidans (50%)
2 1030 bp 67.57 2.48 100.19
scnpilot_cont_500_p_scaffold_15994
Order: Rhizobiales (66.67%)
3 3090 bp 56.60 2.72 100.19
scnpilot_cont_500_p_scaffold_89698
Species: Bosea sp. LC85 (100%)
2 1030 bp 66.89 2.62 100.19
scnpilot_cont_500_p_scaffold_48345
Species: Ochrobactrum intermedium (50%)
2 1545 bp 64.34 3.20 100.19
scnpilot_cont_500_p_scaffold_37025
Species: BJP_08E140C01_Actinomycetales_70_11 (66.67%)
3 3087 bp 70.39 3.06 100.19
scnpilot_cont_500_p_scaffold_9000
Genus: Rhizobium (80%)
5 4629 bp 55.74 2.82 100.19
scnpilot_cont_500_p_scaffold_82559
Species: Streptomyces davawensis (50%)
2 1542 bp 74.25 1.95 100.20
scnpilot_cont_500_p_scaffold_90055
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1027 bp 38.95 1.61 100.20
scnpilot_cont_500_p_scaffold_90111
Species: Hyphomicrobium denitrificans (100%)
2 1027 bp 63.97 1.61 100.20
scnpilot_cont_500_p_scaffold_48628
Species: Microbacterium testaceum (50%)
2 1539 bp 74.85 2.83 100.20
scnpilot_cont_500_p_scaffold_90402
Species: uncultured prokaryote AT5 (100%)
2 1024 bp 60.06 3.52 100.20
scnpilot_cont_500_p_scaffold_48941
Species: Azotobacter chroococcum (50%)
2 1533 bp 57.01 2.74 100.20
scnpilot_cont_500_p_scaffold_90867
Species: Rhizobium tropici (50%)
2 1021 bp 60.33 2.50 100.20
scnpilot_cont_500_p_scaffold_91232
Species: Rhizobium sp. (50%)
2 1018 bp 67.39 1.47 100.20
scnpilot_cont_500_p_scaffold_91237
Species: Mesorhizobium sp. ORS3324 (50%)
2 1018 bp 59.72 1.47 100.20
scnpilot_cont_500_p_scaffold_91530
Species: Chitinophaga pinensis (50%)
2 1015 bp 52.91 1.18 100.20
scnpilot_cont_500_p_scaffold_91613
Order: Burkholderiales (100%)
3 1015 bp 67.19 2.36 100.20
Displaying items 79501-79550 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.