ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 79751-79800 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_52195 Species: Rhizobium leguminosarum (50%)	2	1472 bp	51.43	2.55	100.27
scnpilot_cont_500_p_scaffold_52201 Species: Cellulomonas flavigena (50%)	2	1472 bp	78.46	4.79	100.27
scnpilot_cont_500_p_scaffold_80879 Species: Alkalilimnicola ehrlichii (50%)	2	1104 bp	54.80	1.90	100.27
scnpilot_cont_500_p_scaffold_80961 Species: GWB2_Geobacteraceae_52_12_curated (100%)	2	1104 bp	60.42	2.17	100.27
scnpilot_cont_500_p_scaffold_81240 Species: R_Alphaproteobacteria_66_14 (100%)	2	1101 bp	68.76	2.59	100.27
scnpilot_cont_500_p_scaffold_81893 Species: Inquilinus limosus (50%)	2	1095 bp	42.92	1.92	100.27
scnpilot_cont_500_p_scaffold_53055 Species: Arthrobacter sp. Rue61a (100%)	2	1457 bp	73.64	2.99	100.28
scnpilot_cont_500_p_scaffold_21598	2	2549 bp	59.08	7.94	100.28
scnpilot_cont_500_p_scaffold_53451 Genus: Acidovorax (66.67%)	3	1451 bp	66.99	1.65	100.28
scnpilot_cont_500_p_scaffold_53559 Species: Agrobacterium tumefaciens (66.67%)	3	1448 bp	65.81	3.21	100.28
scnpilot_cont_500_p_scaffold_53751 Species: Novosphingobium lindaniclasticum (50%)	2	1445 bp	69.48	3.84	100.28
scnpilot_cont_500_p_scaffold_83701 Species: Microbacterium testaceum (50%)	2	1080 bp	71.76	2.78	100.28
scnpilot_cont_500_p_scaffold_83653 Species: Rubellimicrobium thermophilum (100%)	2	1080 bp	69.54	2.50	100.28
scnpilot_cont_500_p_scaffold_38105 Species: Pseudopedobacter saltans (100%)	2	1798 bp	40.99	1.84	100.28
scnpilot_cont_500_p_scaffold_54272 Class: Alphaproteobacteria (50%)	4	1436 bp	72.84	1.46	100.28
scnpilot_cont_500_p_scaffold_17976 Genus: Ochrobactrum (66.67%)	3	2866 bp	60.68	3.14	100.28
scnpilot_cont_500_p_scaffold_84320	2	1074 bp	59.12	1.68	100.28
scnpilot_cont_500_p_scaffold_84376 Species: Methylocella silvestris (50%)	2	1074 bp	62.01	1.68	100.28
scnpilot_cont_500_p_scaffold_54625	4	1430 bp	48.39	3.99	100.28
scnpilot_cont_500_p_scaffold_84671 Species: Janthinobacterium sp. HH01 (100%)	2	1071 bp	43.88	2.24	100.28
scnpilot_cont_500_p_scaffold_18141 Species: Advenella kashmirensis (100%)	4	2851 bp	64.50	3.63	100.28
scnpilot_cont_500_p_scaffold_54979 Species: Modestobacter multiseptatus (50%)	2	1424 bp	67.13	3.16	100.28
scnpilot_cont_500_p_scaffold_85092	2	1068 bp	65.36	1.69	100.28
scnpilot_cont_500_p_scaffold_28989 Order: Rhizobiales (66.67%)	3	2130 bp	69.48	3.73	100.28
scnpilot_cont_500_p_scaffold_85427 Species: Hyphomonas polymorpha (50%)	2	1065 bp	62.91	2.11	100.28
scnpilot_cont_500_p_scaffold_85476 Species: Azospirillum brasilense (50%)	2	1065 bp	65.16	2.25	100.28
scnpilot_cont_500_p_scaffold_85494 Species: Mesorhizobium huakuii (100%)	2	1065 bp	65.16	4.37	100.28
scnpilot_cont_500_p_scaffold_39029 Order: Rhizobiales (100%)	3	1771 bp	65.27	1.69	100.28
scnpilot_cont_500_p_scaffold_39035 Species: Mesorhizobium amorphae (100%)	3	1771 bp	63.52	2.63	100.28
scnpilot_cont_500_p_scaffold_85871 Species: Microbacterium testaceum (100%)	2	1062 bp	76.65	2.26	100.28
scnpilot_cont_500_p_scaffold_85797 Species: Mesorhizobium alhagi (50%)	2	1062 bp	63.75	1.69	100.28
scnpilot_cont_500_p_scaffold_86223 Species: Streptomyces turgidiscabies (50%)	2	1059 bp	71.48	1.70	100.28
scnpilot_cont_500_p_scaffold_39348 Species: Ochrobactrum anthropi (100%)	3	1762 bp	62.77	2.72	100.28
scnpilot_cont_500_p_scaffold_55873	4	1409 bp	64.80	2.24	100.28
scnpilot_cont_500_p_scaffold_55875 Domain: Bacteria (66.67%)	3	1409 bp	49.47	3.30	100.28
scnpilot_cont_500_p_scaffold_86501 Species: Ochrobactrum anthropi (50%)	2	1056 bp	71.21	3.84	100.28
scnpilot_cont_500_p_scaffold_86509 Species: Bradyrhizobium sp. BTAi1 (50%)	2	1056 bp	66.38	2.70	100.28
scnpilot_cont_500_p_scaffold_86533 Species: Chryseobacterium gleum (50%)	2	1056 bp	34.19	1.70	100.28
scnpilot_cont_500_p_scaffold_86568 Species: Mesorhizobium sp. LSJC280B00 (50%)	2	1056 bp	61.65	1.42	100.28
scnpilot_cont_500_p_scaffold_86579 Order: Sphingomonadales (100%)	3	1056 bp	68.94	1.42	100.28
scnpilot_cont_500_p_scaffold_86599 Species: Acetobacteraceae bacterium AT-5844 (50%)	2	1056 bp	64.96	1.70	100.28
scnpilot_cont_500_p_scaffold_56046 Species: Mesorhizobium plurifarium (50%)	2	1406 bp	66.71	1.60	100.28
scnpilot_cont_500_p_scaffold_86901 Species: Nitrosomonas europaea (50%)	2	1053 bp	67.90	1.42	100.29
scnpilot_cont_500_p_scaffold_86953 Species: Variovorax paradoxus (50%)	2	1053 bp	72.65	1.57	100.29
scnpilot_cont_500_p_scaffold_86971 Species: Mesorhizobium sp. LNJC405B00 (50%)	2	1053 bp	60.59	1.71	100.29
scnpilot_cont_500_p_scaffold_87308 Species: Trichoderma virens (50%)	2	1050 bp	68.38	2.29	100.29
scnpilot_cont_500_p_scaffold_18639 Species: Amycolatopsis methanolica (50%)	4	2800 bp	71.96	3.86	100.29
scnpilot_cont_500_p_scaffold_56342 Species: Cupriavidus sp. HPC(L) (50%)	2	1400 bp	61.93	1.61	100.29
scnpilot_cont_500_p_scaffold_87223	4	1050 bp	48.48	3.86	100.29
scnpilot_cont_500_p_scaffold_87227 Species: Bosea sp. LC85 (100%)	2	1050 bp	66.67	1.86	100.29

Displaying items 79751-79800 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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