ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 79801-79850 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_87251 Species: Granulibacter bethesdensis (100%)	2	1050 bp	68.67	2.57	100.29
scnpilot_cont_500_p_scaffold_29767 Species: Rhizobium tropici (66.67%)	3	2097 bp	61.85	3.79	100.29
scnpilot_cont_500_p_scaffold_13244 Species: Legionella hackeliae (80%)	5	3494 bp	38.55	3.01	100.29
scnpilot_cont_500_p_scaffold_39902 Phylum: Proteobacteria (66.67%)	3	1747 bp	67.03	1.55	100.29
scnpilot_cont_500_p_scaffold_23130 Species: Burkholderia sacchari (100%)	2	2444 bp	59.17	1.60	100.29
scnpilot_cont_500_p_scaffold_87674 Species: Variovorax sp. CF313 (100%)	2	1047 bp	70.20	2.29	100.29
scnpilot_cont_500_p_scaffold_56756 Species: Nitrobacter hamburgensis (100%)	2	1394 bp	68.08	2.80	100.29
scnpilot_cont_500_p_scaffold_87940 Species: Hyphomicrobium sp. MC1 (50%)	2	1044 bp	50.67	1.44	100.29
scnpilot_cont_500_p_scaffold_56901 Species: Rhodanobacter spathiphylli (100%)	2	1391 bp	68.80	3.24	100.29
scnpilot_cont_500_p_scaffold_18800 Species: Rhizobium etli (66.67%)	3	2782 bp	60.24	3.61	100.29
scnpilot_cont_500_p_scaffold_88295 Species: Microbacterium hominis (50%)	2	1041 bp	71.85	2.59	100.29
scnpilot_cont_500_p_scaffold_88637 Species: Bosea sp. LC85 (50%)	2	1038 bp	69.56	1.16	100.29
scnpilot_cont_500_p_scaffold_89076 Species: Bosea sp. LC85 (100%)	2	1035 bp	67.92	1.16	100.29
scnpilot_cont_500_p_scaffold_89111 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)	2	1035 bp	62.03	1.74	100.29
scnpilot_cont_500_p_scaffold_89128 Species: R_Alphaproteobacteria_66_14 (50%)	2	1035 bp	63.00	1.45	100.29
scnpilot_cont_500_p_scaffold_89045 Species: Legionella drancourtii (50%)	2	1035 bp	40.48	2.03	100.29
scnpilot_cont_500_p_scaffold_89070 Species: Sphingobacterium sp. ML3W (100%)	2	1035 bp	38.74	2.90	100.29
scnpilot_cont_500_p_scaffold_89784 Order: Rhizobiales (66.67%)	3	1029 bp	67.64	1.60	100.29
scnpilot_cont_500_p_scaffold_89827 Species: Methyloceanibacter caenitepidi (50%)	2	1029 bp	64.72	2.92	100.29
scnpilot_cont_500_p_scaffold_58327 Species: Catenulispora acidiphila (50%)	2	1370 bp	70.07	1.75	100.29
scnpilot_cont_500_p_scaffold_90162 Species: Variovorax paradoxus (50%)	2	1026 bp	65.59	1.61	100.29
scnpilot_cont_500_p_scaffold_30809 Genus: Microbacterium (66.67%)	3	2052 bp	69.30	2.70	100.29
scnpilot_cont_500_p_scaffold_58474 Species: Starkeya novella (50%)	2	1367 bp	66.64	2.19	100.29
scnpilot_cont_500_p_scaffold_58517 Species: Arenimonas composti (100%)	2	1367 bp	73.74	2.96	100.29
scnpilot_cont_500_p_scaffold_30898 Species: Pseudomonas sp. Lz4W (100%)	2	2049 bp	45.63	1.90	100.29
scnpilot_cont_500_p_scaffold_24058 Phylum: Firmicutes (66.67%)	3	2387 bp	67.11	1.89	100.29
scnpilot_cont_500_p_scaffold_90630	2	1023 bp	63.64	2.20	100.29
scnpilot_cont_500_p_scaffold_90649 Species: Microvirga lotononidis (100%)	2	1023 bp	67.74	1.47	100.29
scnpilot_cont_500_p_scaffold_90973 Species: Thalassobium sp. R2A62 (50%)	2	1020 bp	59.22	2.06	100.29
scnpilot_cont_500_p_scaffold_90987 Species: Alcaligenes faecalis (100%)	2	1020 bp	68.04	3.53	100.29
scnpilot_cont_500_p_scaffold_90921 Species: Candidatus Caedibacter acanthamoebae (50%)	2	1020 bp	43.63	1.76	100.29
scnpilot_cont_500_p_scaffold_41674 Species: Variovorax paradoxus (66.67%)	3	1699 bp	69.51	2.65	100.29
scnpilot_cont_500_p_scaffold_31280 Species: Bosea sp. LC85 (100%)	3	2034 bp	66.72	1.92	100.30
scnpilot_cont_500_p_scaffold_91372 Species: Frankia sp. EuI1c (100%)	2	1017 bp	68.63	2.06	100.30
scnpilot_cont_500_p_scaffold_59314 Species: uncultured bacterium (100%)	2	1355 bp	66.86	3.54	100.30
scnpilot_cont_500_p_scaffold_31343 Domain: Bacteria (50%)	4	2031 bp	66.96	1.40	100.30
scnpilot_cont_500_p_scaffold_31418 Species: R_Alphaproteobacteria_66_14 (100%)	2	2028 bp	68.34	2.07	100.30
scnpilot_cont_500_p_scaffold_59910 Species: Ochrobactrum sp. EGD-AQ16 (100%)	2	1346 bp	56.32	3.23	100.30
scnpilot_cont_500_p_scaffold_92570 Species: Cupriavidus basilensis (50%)	2	1008 bp	72.12	1.19	100.30
scnpilot_cont_500_p_scaffold_92587 Species: Acidovorax sp. MR-S7 (50%)	2	1008 bp	66.27	2.08	100.30
scnpilot_cont_500_p_scaffold_92925 Species: Brevundimonas nasdae (50%)	2	1005 bp	67.86	1.79	100.30
scnpilot_cont_500_p_scaffold_92927 Species: Nitrobacter hamburgensis (50%)	2	1005 bp	66.37	3.73	100.30
scnpilot_cont_500_p_scaffold_42651 Species: Rhodanobacter thiooxydans (66.67%)	3	1675 bp	71.76	1.97	100.30
scnpilot_cont_500_p_scaffold_93400 Species: Sphingobacterium sp. ML3W (50%)	2	1002 bp	38.62	2.69	100.30
scnpilot_cont_500_p_scaffold_93444 Species: Granulibacter bethesdensis (50%)	2	1002 bp	72.06	2.40	100.30
scnpilot_cont_500_p_scaffold_60938	2	1331 bp	25.39	2.14	100.30
scnpilot_cont_500_p_scaffold_60972	3	1331 bp	53.49	5.52	100.30
scnpilot_cont_500_p_scaffold_25165 Order: Rhizobiales (66.67%)	3	2324 bp	67.56	2.00	100.30
scnpilot_cont_500_p_scaffold_61622 Species: Pectobacterium carotovorum (50%)	2	1322 bp	38.80	3.52	100.30
scnpilot_cont_500_p_scaffold_20361 Genus: Microbacterium (60%)	5	2641 bp	71.72	1.99	100.30

Displaying items 79801-79850 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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