ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 79851-79900 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_62096
Species: Rhizobium sp. CF142 (100%)
2 1316 bp 68.84 3.42 100.30
scnpilot_cont_500_p_scaffold_44033 3 1642 bp 65.35 1.64 100.31
scnpilot_cont_500_p_scaffold_62302 2 1313 bp 66.87 2.28 100.31
scnpilot_cont_500_p_scaffold_33025
Order: Rhizobiales (66.67%)
3 1968 bp 66.36 3.81 100.31
scnpilot_cont_500_p_scaffold_44154
Species: Cellulomonas fimi (66.67%)
3 1639 bp 76.14 4.30 100.31
scnpilot_cont_500_p_scaffold_33085
Species: Pseudopedobacter saltans (100%)
3 1965 bp 41.02 1.83 100.31
scnpilot_cont_500_p_scaffold_62549
Species: Phyllobacterium sp. YR531 (50%)
2 1310 bp 67.86 2.06 100.31
scnpilot_cont_500_p_scaffold_53922
Species: R_Alphaproteobacteria_66_14 (75%)
4 2611 bp 65.26 2.93 100.31
scnpilot_cont_500_p_scaffold_63010
Species: Leifsonia xyli (100%)
2 1304 bp 68.56 1.61 100.31
scnpilot_cont_500_p_scaffold_20871 5 2602 bp 59.88 7.38 100.31
scnpilot_cont_500_p_scaffold_63265
Species: Microbacterium azadirachtae (50%)
2 1301 bp 70.95 2.65 100.31
scnpilot_cont_500_p_scaffold_33610
Species: Streptomyces rapamycinicus (50%)
2 1947 bp 69.23 1.62 100.31
scnpilot_cont_500_p_scaffold_26242
Species: R_Alphaproteobacteria_66_14 (100%)
2 2264 bp 63.38 1.99 100.31
scnpilot_cont_500_p_scaffold_64128
Genus: Ochrobactrum (100%)
3 1289 bp 67.26 2.79 100.31
scnpilot_cont_500_p_scaffold_34006
Species: Hyphomicrobium denitrificans (100%)
3 1932 bp 60.82 2.17 100.31
scnpilot_cont_500_p_scaffold_64332
Species: Curtobacterium flaccumfaciens (50%)
2 1286 bp 71.70 1.28 100.31
scnpilot_cont_500_p_scaffold_21315
Order: Rhodospirillales (66.67%)
3 2569 bp 61.27 4.20 100.31
scnpilot_cont_500_p_scaffold_21489
Class: Actinobacteria (66.67%)
6 2557 bp 63.63 3.75 100.31
scnpilot_cont_500_p_scaffold_21539
Species: Nitrobacter hamburgensis (100%)
4 2554 bp 66.29 4.70 100.31
scnpilot_cont_500_p_scaffold_65728
Species: Acidovorax avenae (50%)
2 1268 bp 73.11 2.13 100.32
scnpilot_cont_500_p_scaffold_65741
Species: Cupriavidus taiwanensis (50%)
2 1268 bp 72.95 1.42 100.32
scnpilot_cont_500_p_scaffold_34988 4 1899 bp 65.51 7.74 100.32
scnpilot_cont_500_p_scaffold_35228
Species: Microbacterium testaceum (66.67%)
3 1890 bp 71.75 2.06 100.32
scnpilot_cont_500_p_scaffold_19055
Order: Sphingomonadales (66.67%)
3 3463 bp 62.66 2.60 100.32
scnpilot_cont_500_p_scaffold_66454
Species: alpha proteobacterium JLT2015 (100%)
2 1259 bp 67.36 1.67 100.32
scnpilot_cont_500_p_scaffold_35410
Species: Novosphingobium tardaugens (50%)
4 1884 bp 67.68 2.47 100.32
scnpilot_cont_500_p_scaffold_66706
Species: Microbacterium mangrovi (50%)
2 1256 bp 72.93 2.15 100.32
scnpilot_cont_500_p_scaffold_66970
Species: Klebsiella oxytoca (100%)
2 1253 bp 67.28 2.15 100.32
scnpilot_cont_500_p_scaffold_47456
Species: R_Alphaproteobacteria_66_14 (66.67%)
3 1564 bp 67.26 2.30 100.32
scnpilot_cont_500_p_scaffold_67720
Species: Variovorax sp. CF313 (100%)
2 1244 bp 67.12 1.69 100.32
scnpilot_cont_500_p_scaffold_67722
Species: Novosphingobium sp. AP12 (50%)
2 1244 bp 68.33 1.69 100.32
scnpilot_cont_500_p_scaffold_67724 2 1244 bp 19.86 1.21 100.32
scnpilot_cont_500_p_scaffold_35983
Species: Nitrosospira sp. NpAV (50%)
2 1866 bp 63.18 36.66 100.32
scnpilot_cont_500_p_scaffold_27976
Species: Burkholderia mallei (66.67%)
3 2177 bp 52.09 3.10 100.32
scnpilot_cont_500_p_scaffold_67678
Species: Microbacterium testaceum (100%)
2 1244 bp 73.55 1.93 100.32
scnpilot_cont_500_p_scaffold_48167
Species: Arabis alpina (50%)
2 1549 bp 50.10 3.68 100.32
scnpilot_cont_500_p_scaffold_16024
Order: Rhizobiales (50%)
4 3086 bp 65.52 2.28 100.32
scnpilot_cont_500_p_scaffold_22750
Species: Bordetella hinzii (50%)
2 2467 bp 67.09 2.80 100.32
scnpilot_cont_500_p_scaffold_36589
Species: Rhodanobacter fulvus (100%)
3 1848 bp 71.59 2.44 100.33
scnpilot_cont_500_p_scaffold_68945
Species: Bosea sp. LC85 (50%)
2 1229 bp 59.40 1.46 100.33
scnpilot_cont_500_p_scaffold_69215
Order: Sphingomonadales (66.67%)
3 1226 bp 70.23 2.94 100.33
scnpilot_cont_500_p_scaffold_69219
Species: Skermanella aerolata (50%)
2 1226 bp 69.41 1.71 100.33
scnpilot_cont_500_p_scaffold_69442 3 1223 bp 47.10 2.45 100.33
scnpilot_cont_500_p_scaffold_16267
Species: Variovorax paradoxus (75%)
4 3056 bp 70.48 1.57 100.33
scnpilot_cont_500_p_scaffold_19152
Species: Ochrobactrum intermedium (50%)
4 2748 bp 65.47 2.07 100.33
scnpilot_cont_500_p_scaffold_70011
Species: Micromonospora carbonacea (50%)
2 1217 bp 74.36 2.22 100.33
scnpilot_cont_500_p_scaffold_70023
Species: Sphingomonas taxi (100%)
2 1217 bp 68.04 1.36 100.33
scnpilot_cont_500_p_scaffold_70236
Species: R_Alphaproteobacteria_66_14 (50%)
2 1214 bp 73.31 3.46 100.33
scnpilot_cont_500_p_scaffold_29362
Genus: Rhodanobacter (66.67%)
3 2114 bp 68.21 3.90 100.33
scnpilot_cont_500_p_scaffold_29444
Species: Delftia acidovorans (66.67%)
3 2111 bp 70.25 2.20 100.33
Displaying items 79851-79900 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.