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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 79901-79950 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_71028 3 1205 bp 58.92 5.98 100.33
scnpilot_cont_500_p_scaffold_14459
Species: Candidatus Caedibacter acanthamoebae (100%)
4 3307 bp 36.17 2.27 100.33
scnpilot_cont_500_p_scaffold_71281
Species: Erwinia typographi (50%)
2 1202 bp 68.55 2.00 100.33
scnpilot_cont_500_p_scaffold_71299
Species: Variovorax sp. CF313 (100%)
2 1202 bp 67.72 1.62 100.33
scnpilot_cont_500_p_scaffold_23786
Species: Rhizobium tropici (100%)
2 2404 bp 61.48 3.49 100.33
scnpilot_cont_500_p_scaffold_37919
Species: Sphingomonas sp. RIT328 (66.67%)
3 1803 bp 70.44 3.00 100.33
scnpilot_cont_500_p_scaffold_71585
Species: Sphingobium sp. C100 (50%)
2 1199 bp 60.38 2.38 100.33
scnpilot_cont_500_p_scaffold_71622
Species: Burkholderia glathei (100%)
2 1199 bp 69.31 2.25 100.33
scnpilot_cont_500_p_scaffold_38264
Species: Rhizobium tropici (66.67%)
3 1794 bp 63.71 2.84 100.33
scnpilot_cont_500_p_scaffold_71838
Species: Sphingomonas wittichii (50%)
2 1196 bp 65.64 2.76 100.33
scnpilot_cont_500_p_scaffold_71886
Species: Leifsonia xyli (66.67%)
3 1196 bp 71.82 2.01 100.33
scnpilot_cont_500_p_scaffold_72117
Species: Acidisphaera rubrifaciens (50%)
2 1193 bp 69.07 1.76 100.34
scnpilot_cont_500_p_scaffold_38446
Species: Legionella pneumophila (66.67%)
3 1788 bp 39.88 2.35 100.34
scnpilot_cont_500_p_scaffold_38574
Species: Microbacterium testaceum (100%)
3 1785 bp 72.04 2.35 100.34
scnpilot_cont_500_p_scaffold_72426
Species: Sphingomonas taxi (50%)
2 1190 bp 74.37 2.27 100.34
scnpilot_cont_500_p_scaffold_14703
Class: Actinobacteria (100%)
3 3268 bp 72.46 2.48 100.34
scnpilot_cont_500_p_scaffold_38669
Species: R_Alphaproteobacteria_66_14 (66.67%)
3 1782 bp 67.56 3.03 100.34
scnpilot_cont_500_p_scaffold_24266
Class: Alphaproteobacteria (100%)
3 2374 bp 64.32 1.58 100.34
scnpilot_cont_500_p_scaffold_72967
Order: Micrococcales (66.67%)
3 1184 bp 68.41 2.28 100.34
scnpilot_cont_500_p_scaffold_73543 2 1178 bp 13.33 2.42 100.34
scnpilot_cont_500_p_scaffold_73582
Species: CSP1_4_Chloroflexi (50%)
2 1178 bp 67.32 3.31 100.34
scnpilot_cont_500_p_scaffold_73848
Species: Agreia bicolorata (50%)
2 1175 bp 72.60 2.81 100.34
scnpilot_cont_500_p_scaffold_52415
Species: Agrobacterium rhizogenes (50%)
2 1468 bp 64.65 2.66 100.34
scnpilot_cont_500_p_scaffold_24854
Species: Nitrobacter hamburgensis (100%)
3 2341 bp 64.08 2.11 100.34
scnpilot_cont_500_p_scaffold_39728
Species: GWE1_Burkholderiales_65_30_curated (50%)
2 1752 bp 65.18 1.71 100.34
scnpilot_cont_500_p_scaffold_52953
Species: R_Alphaproteobacteria_66_14 (100%)
3 1459 bp 67.72 2.36 100.34
scnpilot_cont_500_p_scaffold_52985
Species: Devosia sp. 17-2-E-8 (50%)
2 1459 bp 69.71 5.04 100.34
scnpilot_cont_500_p_scaffold_31067
Species: Saccharomonospora marina (100%)
3 2042 bp 74.39 6.68 100.34
scnpilot_cont_500_p_scaffold_74606
Species: uncultured bacterium A1Q1_fos_75 (50%)
2 1166 bp 64.84 1.54 100.34
scnpilot_cont_500_p_scaffold_74616
Species: Variovorax sp. CF313 (100%)
2 1166 bp 64.58 1.54 100.34
scnpilot_cont_500_p_scaffold_74628
Species: Microbacterium sp. C448 (50%)
2 1166 bp 72.38 2.32 100.34
scnpilot_cont_500_p_scaffold_53138
Species: R_Alphaproteobacteria_66_14 (100%)
3 1456 bp 67.38 2.58 100.34
scnpilot_cont_500_p_scaffold_75194
Species: Rhodopseudomonas palustris (50%)
2 1160 bp 64.05 2.07 100.35
scnpilot_cont_500_p_scaffold_53488
Species: Novosphingobium sp. P6W (50%)
2 1450 bp 68.48 1.66 100.35
scnpilot_cont_500_p_scaffold_53493
Order: Rhodobacterales (50%)
4 1450 bp 62.28 3.21 100.35
scnpilot_cont_500_p_scaffold_40173
Species: R_Alphaproteobacteria_66_14 (100%)
3 1740 bp 66.21 2.76 100.35
scnpilot_cont_500_p_scaffold_25344
Species: Rhizobium freirei (100%)
3 2314 bp 60.67 4.60 100.35
scnpilot_cont_500_p_scaffold_75752
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1154 bp 38.73 1.69 100.35
scnpilot_cont_500_p_scaffold_75762
Species: Chitinophaga pinensis (50%)
2 1154 bp 52.34 1.30 100.35
scnpilot_cont_500_p_scaffold_40464
Species: Hyphomicrobium denitrificans (100%)
3 1731 bp 61.24 1.73 100.35
scnpilot_cont_500_p_scaffold_40807
Species: Bordetella bronchiseptica (50%)
2 1722 bp 68.23 1.92 100.35
scnpilot_cont_500_p_scaffold_76353
Species: Rhizobium tropici (100%)
2 1148 bp 61.93 3.40 100.35
scnpilot_cont_500_p_scaffold_76634
Species: Bradyrhizobium diazoefficiens (100%)
2 1145 bp 67.07 2.10 100.35
scnpilot_cont_500_p_scaffold_41027
Species: Sphingobacterium sp. ML3W (50%)
2 1716 bp 43.53 1.84 100.35
scnpilot_cont_500_p_scaffold_76865
Species: Rhodanobacter spathiphylli (50%)
2 1142 bp 69.88 2.50 100.35
scnpilot_cont_500_p_scaffold_76898
Species: R_Alphaproteobacteria_66_14 (100%)
2 1142 bp 66.37 1.84 100.35
scnpilot_cont_500_p_scaffold_76908
Species: Hyphomicrobium denitrificans (50%)
2 1142 bp 71.80 1.71 100.35
scnpilot_cont_500_p_scaffold_41147
Order: Rhodospirillales (66.67%)
3 1713 bp 66.90 3.24 100.35
scnpilot_cont_500_p_scaffold_77186
Species: Nitratireductor indicus (50%)
2 1139 bp 68.04 2.37 100.35
scnpilot_cont_500_p_scaffold_77900
Species: Microbacterium testaceum (100%)
2 1133 bp 75.20 2.52 100.35
Displaying items 79901-79950 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.