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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 80401-80450 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_93291 2 1003 bp 54.44 5.83 100.80
scnpilot_cont_500_p_scaffold_57720
Species: Microbacterium mangrovi (100%)
2 1378 bp 73.29 2.39 100.80
scnpilot_cont_500_p_scaffold_67234
Species: Hyphomicrobium denitrificans (100%)
3 1250 bp 59.84 2.16 100.80
scnpilot_cont_500_p_scaffold_93691 3 1000 bp 57.80 4.95 100.80
scnpilot_cont_500_p_scaffold_57927
Species: Bradyrhizobium elkanii (50%)
2 1375 bp 69.89 2.51 100.80
scnpilot_cont_500_p_scaffold_50808
Species: Microbacterium sp. oral taxon 186 (50%)
2 1497 bp 71.28 3.31 100.80
scnpilot_cont_500_p_scaffold_78962
Species: Variovorax sp. CF313 (100%)
2 1122 bp 65.60 2.41 100.80
scnpilot_cont_500_p_scaffold_79332
Species: Hyphomicrobium denitrificans (100%)
2 1119 bp 59.87 2.68 100.80
scnpilot_cont_500_p_scaffold_79333 3 1119 bp 53.71 1.47 100.80
scnpilot_cont_500_p_scaffold_51317
Species: Bosea sp. LC85 (66.67%)
3 1488 bp 63.58 2.02 100.81
scnpilot_cont_500_p_scaffold_68176 3 1238 bp 44.43 4.00 100.81
scnpilot_cont_500_p_scaffold_51494
Species: Kibdelosporangium sp. MJ126-NF4 (50%)
2 1485 bp 69.63 2.63 100.81
scnpilot_cont_500_p_scaffold_45656
Species: Meyerozyma guilliermondii (50%)
2 1604 bp 62.97 2.06 100.81
scnpilot_cont_500_p_scaffold_59158
Species: Microbacterium sp. SUBG005 (50%)
2 1357 bp 72.81 1.99 100.81
scnpilot_cont_500_p_scaffold_80888
Species: Agreia bicolorata (50%)
2 1104 bp 75.27 1.63 100.82
scnpilot_cont_500_p_scaffold_59790
Species: Microbacterium testaceum (100%)
2 1348 bp 71.44 2.11 100.82
scnpilot_cont_500_p_scaffold_30425
Class: Alphaproteobacteria (66.67%)
3 2068 bp 67.55 3.12 100.82
scnpilot_cont_500_p_scaffold_18665
Species: Rhodanobacter denitrificans (66.67%)
3 2797 bp 70.11 3.00 100.82
scnpilot_cont_500_p_scaffold_10922
Class: Gammaproteobacteria (66.67%)
3 4011 bp 40.64 4.11 100.82
scnpilot_cont_500_p_scaffold_82266
Species: Ralstonia pickettii (50%)
2 1092 bp 68.41 2.20 100.82
scnpilot_cont_500_p_scaffold_46842
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1577 bp 66.58 2.38 100.82
scnpilot_cont_500_p_scaffold_25551
Species: Afipia sp. P52-10 (50%)
4 2303 bp 67.74 3.06 100.83
scnpilot_cont_500_p_scaffold_70495 3 1211 bp 45.17 3.34 100.83
scnpilot_cont_500_p_scaffold_33961
Genus: Ochrobactrum (100%)
3 1934 bp 66.29 3.10 100.83
scnpilot_cont_500_p_scaffold_30805 3 2053 bp 58.74 7.89 100.83
scnpilot_cont_500_p_scaffold_53896
Species: Kirrobacter mercurialis (50%)
2 1443 bp 61.40 3.43 100.83
scnpilot_cont_500_p_scaffold_15719 3 3124 bp 58.80 8.35 100.83
scnpilot_cont_500_p_scaffold_71641
Species: Bombyx mori (50%)
2 1199 bp 57.96 2.00 100.83
scnpilot_cont_500_p_scaffold_28408 4 2157 bp 61.61 8.55 100.83
scnpilot_cont_500_p_scaffold_54225
Species: Acinetobacter tjernbergiae (50%)
2 1437 bp 42.24 1.88 100.84
scnpilot_cont_500_p_scaffold_62370
Genus: Microbacterium (66.67%)
3 1312 bp 71.27 1.60 100.84
scnpilot_cont_500_p_scaffold_62876
Genus: Bradyrhizobium (66.67%)
3 1306 bp 57.73 1.84 100.84
scnpilot_cont_500_p_scaffold_15128
Phylum: Proteobacteria (60%)
5 3204 bp 68.88 2.86 100.84
scnpilot_cont_500_p_scaffold_85149 2 1068 bp 56.84 2.67 100.84
scnpilot_cont_500_p_scaffold_85159 2 1068 bp 57.87 1.12 100.84
scnpilot_cont_500_p_scaffold_38760
Species: R_Phenylobacterium_69_31 (50%)
2 1779 bp 61.16 2.53 100.84
scnpilot_cont_500_p_scaffold_73799
Species: Rhodanobacter spathiphylli (50%)
2 1175 bp 70.89 2.30 100.85
scnpilot_cont_500_p_scaffold_49296
Species: Sphingomonas sp. MM-1 (50%)
2 1526 bp 67.43 2.85 100.85
scnpilot_cont_500_p_scaffold_49419
Species: Bradyrhizobium sp. BTAi1 (50%)
2 1523 bp 67.56 2.36 100.85
scnpilot_cont_500_p_scaffold_32452
Species: Microbacterium mangrovi (66.67%)
3 1990 bp 72.61 2.71 100.85
scnpilot_cont_500_p_scaffold_19775
Species: Microbacterium sp. oral taxon 186 (50%)
2 2692 bp 71.47 3.57 100.85
scnpilot_cont_500_p_scaffold_86980
Species: Chthoniobacter flavus (50%)
2 1053 bp 61.44 1.42 100.86
scnpilot_cont_500_p_scaffold_64395
Species: alpha proteobacterium BAL199 (100%)
2 1285 bp 63.66 1.63 100.86
scnpilot_cont_500_p_scaffold_64645 2 1282 bp 65.13 1.87 100.86
scnpilot_cont_500_p_scaffold_76285
Species: Microbacterium testaceum (50%)
2 1148 bp 71.08 4.44 100.87
scnpilot_cont_500_p_scaffold_33504
Species: Rhodopseudomonas palustris (50%)
2 1951 bp 63.66 2.31 100.87
scnpilot_cont_500_p_scaffold_89480
Species: Moumouvirus (50%)
2 1032 bp 25.58 2.62 100.87
scnpilot_cont_500_p_scaffold_76889
Species: Sphingopyxis sp. LC81 (66.67%)
3 1142 bp 70.75 1.58 100.88
scnpilot_cont_500_p_scaffold_66808 2 1255 bp 65.34 5.26 100.88
scnpilot_cont_500_p_scaffold_66765
Species: Clavibacter michiganensis (100%)
2 1255 bp 75.22 2.15 100.88
Displaying items 80401-80450 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.