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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 80451-80500 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_58430
Species: Sphingomonas sp. WHSC-8 (100%)
3 1368 bp 68.35 1.32 100.88
scnpilot_cont_500_p_scaffold_90230 2 1026 bp 62.28 3.95 100.88
scnpilot_cont_500_p_scaffold_90234 2 1026 bp 51.46 3.36 100.88
scnpilot_cont_500_p_scaffold_77267
Species: Rhodanobacter denitrificans (50%)
2 1139 bp 65.14 2.24 100.88
scnpilot_cont_500_p_scaffold_80396
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (66.67%)
3 1591 bp 71.28 3.68 100.88
scnpilot_cont_500_p_scaffold_41481
Species: Hoeflea sp. BRH_c9 (100%)
3 1704 bp 64.73 2.82 100.88
scnpilot_cont_500_p_scaffold_46359
Species: Leishmania infantum (50%)
2 1588 bp 50.31 3.12 100.88
scnpilot_cont_500_p_scaffold_90993
Species: Acanthamoeba castellanii (66.67%)
3 1020 bp 57.94 1.18 100.88
scnpilot_cont_500_p_scaffold_59036 3 1359 bp 65.12 2.65 100.88
scnpilot_cont_500_p_scaffold_41738
Species: Burkholderia pyrrocinia (50%)
2 1698 bp 64.61 1.77 100.88
scnpilot_cont_500_p_scaffold_16345
Genus: Microbacterium (50%)
4 3048 bp 76.15 3.74 100.89
scnpilot_cont_500_p_scaffold_68056
Species: Pseudomonas mediterranea (50%)
4 1240 bp 59.19 1.00 100.89
scnpilot_cont_500_p_scaffold_47041
Domain: Metazoa (50%)
4 1573 bp 46.73 3.43 100.89
scnpilot_cont_500_p_scaffold_30786
Species: R_Alphaproteobacteria_66_14 (75%)
4 3476 bp 68.04 2.72 100.89
scnpilot_cont_500_p_scaffold_92962 3 1005 bp 55.12 3.58 100.90
scnpilot_cont_500_p_scaffold_47585
Species: GWA2_Curvibacter_64_110_curated (50%)
2 1561 bp 67.20 1.73 100.90
scnpilot_cont_500_p_scaffold_38599
Species: Citrus sinensis (50%)
2 1784 bp 27.02 1.51 100.90
scnpilot_cont_500_p_scaffold_60862
Order: Burkholderiales (66.67%)
3 1332 bp 67.49 2.36 100.90
scnpilot_cont_500_p_scaffold_80777
Species: Sphingobacterium sp. ML3W (100%)
2 1106 bp 41.14 1.36 100.90
scnpilot_cont_500_p_scaffold_54319
Species: Achromobacter insuavis (50%)
2 1436 bp 69.71 3.24 100.91
scnpilot_cont_500_p_scaffold_61765
Class: Alphaproteobacteria (66.67%)
3 1320 bp 38.79 2.27 100.91
scnpilot_cont_500_p_scaffold_48591
Order: Sphingomonadales (66.67%)
3 1540 bp 66.56 2.63 100.91
scnpilot_cont_500_p_scaffold_70891 4 1207 bp 60.23 2.11 100.91
scnpilot_cont_500_p_scaffold_36068
Order: Burkholderiales (66.67%)
3 1864 bp 67.76 2.49 100.91
scnpilot_cont_500_p_scaffold_49038
Species: Acinetobacter sp. NIPH 236 (50%)
2 1531 bp 41.21 2.55 100.91
scnpilot_cont_500_p_scaffold_82342 2 1091 bp 63.89 8.52 100.92
scnpilot_cont_500_p_scaffold_22130
Species: R_Alphaproteobacteria_66_14 (100%)
2 2509 bp 68.07 2.69 100.92
scnpilot_cont_500_p_scaffold_55349
Species: Chlorobium sp. GBChlB (50%)
2 1418 bp 51.69 1.90 100.92
scnpilot_cont_500_p_scaffold_71723 3 1198 bp 72.45 3.76 100.92
scnpilot_cont_500_p_scaffold_33266
Species: Leishmania mexicana (50%)
2 1959 bp 57.94 6.97 100.92
scnpilot_cont_500_p_scaffold_83116
Species: Sphingobacterium spiritivorum (50%)
4 1085 bp 40.46 1.66 100.92
scnpilot_cont_500_p_scaffold_83135
Species: Rhodanobacter fulvus (100%)
2 1085 bp 71.80 2.21 100.92
scnpilot_cont_500_p_scaffold_44725 4 1626 bp 59.35 7.38 100.92
scnpilot_cont_500_p_scaffold_33512
Species: Microbacterium sp. C448 (100%)
2 1950 bp 74.77 3.08 100.92
scnpilot_cont_500_p_scaffold_84777 2 1070 bp 65.23 1.68 100.94
scnpilot_cont_500_p_scaffold_64474
Species: Parvibaculum lavamentivorans (100%)
2 1284 bp 61.76 2.69 100.94
scnpilot_cont_500_p_scaffold_24720 3 2348 bp 63.25 6.20 100.94
scnpilot_cont_500_p_scaffold_73889 3 1174 bp 58.35 7.79 100.94
scnpilot_cont_500_p_scaffold_18459
Species: R_Alphaproteobacteria_66_14 (100%)
5 3201 bp 69.79 2.91 100.94
scnpilot_cont_500_p_scaffold_80924
Species: bacterium YEK0313 (66.67%)
3 1382 bp 68.52 2.50 100.94
scnpilot_cont_500_p_scaffold_46132 3 1593 bp 23.41 1.41 100.94
scnpilot_cont_500_p_scaffold_92979
Species: Burkholderia pseudomallei (50%)
2 1911 bp 69.70 3.14 100.94
scnpilot_cont_500_p_scaffold_57660
Species: Mesorhizobium plurifarium (100%)
3 1379 bp 69.40 1.63 100.94
scnpilot_cont_500_p_scaffold_65578
Order: Rhizobiales (66.67%)
3 1269 bp 65.48 2.25 100.95
scnpilot_cont_500_p_scaffold_65861
Species: Sphingobacterium sp. PM2-P1-29 (100%)
2 1266 bp 42.65 2.13 100.95
scnpilot_cont_500_p_scaffold_87380
Species: Candidatus Microthrix parvicella (50%)
2 1049 bp 61.11 3.15 100.95
scnpilot_cont_500_p_scaffold_16415
Species: Capsaspora owczarzaki (50%)
2 3040 bp 64.77 2.07 100.95
scnpilot_cont_500_p_scaffold_47094
Species: Plasmodium knowlesi (50%)
2 1572 bp 29.39 1.91 100.95
scnpilot_cont_500_p_scaffold_66860
Species: CG_TM7_01 (50%)
2 1254 bp 47.29 1.79 100.96
scnpilot_cont_500_p_scaffold_52797 3 1462 bp 48.56 3.39 100.96
Displaying items 80451-80500 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.