ggKbase home page

scnpilot_cont_500_p_scaffold_57

Search features with annotation key words

Displaying items 31-60 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_57_31
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27224..27457
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z6K9_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI98241.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japo
scnpilot_cont_500_p_scaffold_57_32
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27483..27890
DNA (408bp) protein (136aa)
Fe-S center assembly protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NC31_ERYLH
Fe-S center assembly protein
Fe-S center assembly protein {ECO:0000313|EMBL:ABC62760.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrob
scnpilot_cont_500_p_scaffold_57_33
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27898..28248
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B64E1F
Uncharacterized protein {ECO:0000313|EMBL:GAO54813.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_cont_500_p_scaffold_57_34
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28475..30106)
DNA (1632bp) protein (544aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_0
CTP synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI37_9SPHN rbh
CTP synthase
scnpilot_cont_500_p_scaffold_57_35
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30285..30650)
DNA (366bp) protein (122aa)
Protein translocase subunit secG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6R6_NOVAD
protein translocase subunit secG
Protein translocase subunit secG {ECO:0000313|EMBL:ABD26457.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov
scnpilot_cont_500_p_scaffold_57_36
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30790..31542)
DNA (753bp) protein (251aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Sphingomonas sp. LH128 RepID=J8V9J7_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_37
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31831..33756
DNA (1926bp) protein (642aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomo
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZI2_9SPHN rbh
hypothetical protein
scnpilot_cont_500_p_scaffold_57_38
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33784..35310
DNA (1527bp) protein (509aa)
Anthranilate synthase, aminase component {ECO:0000313|EMBL:GAO55969.1}; EC=4.1.3.27 {ECO:0000313|EMBL:GAO55969.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
anthranilate synthase, component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CA27_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_39
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35307..35900
DNA (594bp) protein (198aa)
Para-aminobenzoate synthase {ECO:0000313|EMBL:EQB11983.1}; EC=2.6.1.85 {ECO:0000313|EMBL:EQB11983.1};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomo
para-aminobenzoate synthase (EC:2.6.1.85)
Para-aminobenzoate synthase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HIK7_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_40
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35897..36892
DNA (996bp) protein (332aa)
Anthranilate phosphoribosyltransferase {ECO:0000313|EMBL:AKH41657.1}; EC=2.4.2.18 {ECO:0000313|EMBL:AKH41657.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9K6_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_41
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36889..37677
DNA (789bp) protein (263aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5D08E rbh
scnpilot_cont_500_p_scaffold_57_42
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37674..38234)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FVE2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL21115.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
NUDIX hydrolase
scnpilot_cont_500_p_scaffold_57_43
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38327..38800
DNA (474bp) protein (158aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AC13_9SPHN
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1630648 species="Bac
moaC; molybdenum cofactor biosynthesis protein MoaC
scnpilot_cont_500_p_scaffold_57_44
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38797..40002
DNA (1206bp) protein (402aa)
Molybdopterin biosynthesis enzyme n=1 Tax=Novosphingobium sp. AP12 RepID=J2PPU5_9SPHN rbh
Molybdopterin biosynthesis enzyme {ECO:0000313|EMBL:EJL29652.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="N
molybdopterin molybdochelatase
scnpilot_cont_500_p_scaffold_57_45
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40069..40752
DNA (684bp) protein (228aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria;
repressor LexA (EC:3.4.21.88)
LexA repressor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPY9_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_46
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40746..42683)
DNA (1938bp) protein (646aa)
metal-binding protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E529 rbh
ComEC family competence protein {ECO:0000313|EMBL:AKH41664.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source=
membrane metal-binding protein
scnpilot_cont_500_p_scaffold_57_47
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43020..44474
DNA (1455bp) protein (485aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase 2 {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase 2 {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS 2 {ECO:0000255|HAM
Glutamate--tRNA ligase 2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYE2_NOVAD rbh
scnpilot_cont_500_p_scaffold_57_48
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44511..45794
DNA (1284bp) protein (428aa)
citrate synthase (EC:2.3.3.1)
Citrate synthase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPZ2_9SPHN rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
scnpilot_cont_500_p_scaffold_57_49
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46101..47468)
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Two-component signal transduction histidine kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPZ3_9SPHN rbh
two-component signal transduction histidine kinase
scnpilot_cont_500_p_scaffold_57_50
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47465..48409)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIP0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91588.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_cont_500_p_scaffold_57_51
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48434..49498)
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9J6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55954.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_cont_500_p_scaffold_57_52
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49778..50080)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AIN1_9SPHN
Scaffold17, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30752.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
hypothetical protein
scnpilot_cont_500_p_scaffold_57_53
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50152..52503
DNA (2352bp) protein (784aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI48_9SPHN rbh
ATPase {ECO:0000313|EMBL:KEO92409.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
ATPase
scnpilot_cont_500_p_scaffold_57_54
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52514..52798)
DNA (285bp) protein (95aa)
Putative secreted protein n=1 Tax=Sphingobium sp. AP49 RepID=J2KUK3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFD28883.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
hypothetical protein
scnpilot_cont_500_p_scaffold_57_55
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52795..54399)
DNA (1605bp) protein (535aa)
Metallo-beta-lactamase hydrolase subunit n=1 Tax=Sphingomonas sp. LH128 RepID=J8S9L5_9SPHN rbh
Metallo-beta-lactamase hydrolase subunit {ECO:0000313|EMBL:EZP84858.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
RNA-metabolising metallo-beta-lactamase
scnpilot_cont_500_p_scaffold_57_56
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54515..55294)
DNA (780bp) protein (260aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IQQ9_9SPHN rbh
pantothenate kinase
scnpilot_cont_500_p_scaffold_57_57
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55320..56027)
DNA (708bp) protein (236aa)
biotin--protein ligase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E51F
Biotin protein ligase {ECO:0000313|EMBL:GAD47949.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
biotin--protein ligase
scnpilot_cont_500_p_scaffold_57_58
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56042..57505)
DNA (1464bp) protein (488aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit
NADH dehydrogenase I subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N n=1 Tax=Novosphingobium sp. AP12 RepID=J3AK60_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_59
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57505..59049)
DNA (1545bp) protein (515aa)
NADH dehydrogenase I subunit M n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIN1_9SPHN rbh
NADH-quinone oxidoreductase chain 13
NADH dehydrogenase I subunit M {ECO:0000313|EMBL:EHJ58973.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
scnpilot_cont_500_p_scaffold_57_60
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59078..61120)
DNA (2043bp) protein (681aa)
NADH dehydrogenase subunit L {ECO:0000313|EMBL:ABD26726.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABD26726.1};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomo
NADH dehydrogenase subunit L (EC:1.6.99.5)
NADH dehydrogenase subunit L n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5Z7_NOVAD rbh
Displaying items 31-60 of 153 in total

View Taxonomy