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scnpilot_p_inoc_scaffold_215_108

Organism: SCNpilot_P_inoc_Thiobacillus_strain2_63_34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(107602..108165)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12496217 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 188.0
  • Bit_score: 380
  • Evalue 1.10e-102
  • rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 187.0
  • Bit_score: 312
  • Evalue 5.20e-82
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 51.6
  • Coverage: 184.0
  • Bit_score: 178
  • Evalue 1.40e-42

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Taxonomy

RIFOXYD1_FULL_Hydrogenophilales_62_11_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGGACGCACTGGACGCGCAAGCCTGGCTGACCGAGCACGGCGACTACCTGTTTCGTGTCGCCCGCCGCCAGTTGCGGTCGGACGAACAGGCCGAGGACGCCGTGCAGGAGACCCTTCTGGCTGCGCTCACCGCCCGCGACCGCTATGCGGGCGAGGCCAGCCCGCGTACCTGGCTCACCGCCATCCTCAAGCACAAGATCGTGGATGCGATCCGGCGCCAGATGCGTGAAGTCGAGCTGCCCCGGGACGCCGACGACGAGGAGGCGGTTGACGCCTTGTTCCGGGCGGACGGGCACTGGGCGACGCCGCTTGGAGCCTGGGGCAACCCCCAGACGGCGGCCGAGCTCAATCAGTTGCGGCATGCGCTGGCCACATGTGCCGACCGGCTGAAGCCGGCCATGGCCCAGGTTTTCAGCCTGCGTGAAATCGCCGGCATGGAAACGGAAGAAATCTGTAAGGAACTCGATATCACCCCGACCAACTGCTGGGTTCTGCTGCATCGGGCACGTCTGTTCATGCGCCAGTGCCTGGAACTGAACGGCTTTTCGGGAGCAGGCGCATGA
PROTEIN sequence
Length: 188
MDALDAQAWLTEHGDYLFRVARRQLRSDEQAEDAVQETLLAALTARDRYAGEASPRTWLTAILKHKIVDAIRRQMREVELPRDADDEEAVDALFRADGHWATPLGAWGNPQTAAELNQLRHALATCADRLKPAMAQVFSLREIAGMETEEICKELDITPTNCWVLLHRARLFMRQCLELNGFSGAGA*