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RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633

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Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_1
RHI_SM2F11_48_16, SM2F11, Bacteria

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2..451
DNA (450bp) protein (150aa)
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
30S ribosomal protein S6 id=1816778 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S6
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_2
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

468..935
DNA (468bp) protein (156aa)
Single-stranded DNA binding protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Single-stranded DNA-binding protein id=1816776 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Single-stranded DNA binding protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_3
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists


972..1193
DNA (222bp) protein (74aa)
30S ribosomal protein S18 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PU81_9FIRM
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
rpsR; 30S ribosomal protein S18
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_4
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

1207..1779
DNA (573bp) protein (191aa)
elongation factor P; K02356 elongation factor P Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
elongation factor P; K02356 elongation factor EF-P id=54249 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
elongation factor P
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_5
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(1849..4599)
DNA (2751bp) protein (917aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_6
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(4670..5017)
DNA (348bp) protein (116aa)
Blue (Type 1) copper domain protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E936_METEZ id=5103245 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Blue (Type 1) copper protein
Blue (Type 1) copper domain protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_7
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(5020..6264)
DNA (1245bp) protein (415aa)
GdhA; glutamate dehydrogenase/leucine dehydrogenase; K00260 glutamate dehydrogenase [EC:1.4.1.2] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Glutamate dehydrogenase id=3063635 bin=GWF2_CPR3_35_18 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF2_CPR3_35_18 organism_group=CPR3
GdhA; glutamate dehydrogenase/leucine dehydrogenase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_8
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(6383..6589)
DNA (207bp) protein (69aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_9
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(6706..7656)
DNA (951bp) protein (317aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Thioredoxin reductase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBG9_THET1
thioredoxin reductase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_10
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(7669..8628)
DNA (960bp) protein (320aa)
FAD-dependent pyridine nucleotide-disulfideoxido reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein id=5801255 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
FAD-dependent pyridine nucleotide-disulfideoxido reductase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_11
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(8625..9452)
DNA (828bp) protein (276aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolat
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein folD n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAP2_9PROT id=57064 bin=ACD43 species=Caminibacter mediatlanticus genus=Caminibacter taxon_order=Nautiliales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_12
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

9654..10193
DNA (540bp) protein (180aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=5802028 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
ECF subfamily RNA polymerase sigma-24 factor
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_13
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

10203..10922
DNA (720bp) protein (240aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_14
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(10937..11719)
DNA (783bp) protein (261aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_15
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

11746..11853
DNA (108bp) protein (36aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_16
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

11916..12563
DNA (648bp) protein (216aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_17
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(12510..13733)
DNA (1224bp) protein (408aa)
Arabinose efflux permease n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEY7_CHLTF
arabinose efflux permease Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
arabinose efflux permease
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_18
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(14267..14854)
DNA (588bp) protein (196aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_19
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

14951..15871
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein; K09799 hypothetical protein id=5803102 bin=OD1_GWC2_34_28 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_20
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists


15964..16986
DNA (1023bp) protein (341aa)
gcp; O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=uncultured bacterium RepID=K1ZHL1_9BACT
gcp; O-sialoglycoprotein endopeptidase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_21
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists


17175..19811
DNA (2637bp) protein (879aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5803646 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
valS; valine--tRNA ligase ValS (EC:6.1.1.9)
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_22
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(19903..20442)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000364A068
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_23
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(20485..20730)
DNA (246bp) protein (82aa)
Excinuclease ABC subunit C protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XXF5_9BACT
hypothetical protein; K07461 putative endonuclease Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_24
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(20733..21023)
DNA (291bp) protein (97aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_25
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(21034..21699)
DNA (666bp) protein (222aa)
id=2130085 Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
id=2130085 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_26
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(21705..21947)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035ECDD4
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_27
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

21969..22070
DNA (102bp) protein (34aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_28
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

22146..22769
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Synechococcus phage S-SM1 RepID=E3SI77_9CAUD
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_29
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(22746..23876)
DNA (1131bp) protein (377aa)
N-6 DNA methylase n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7DBM9_STAHD
N-6 DNA methylase Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
N-6 DNA methylase
RIFCSPHIGHO2_01_FULL_OD1_50_67_rifcsphigho2_01_scaffold_633_30
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(23996..24829)
DNA (834bp) protein (278aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
Putative uncharacterized protein id=1317115 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Displaying items 1-30 of 67 in total

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