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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 101-150 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_10604 CNBR_UNK_37
Class: Betaproteobacteria (57.14%)
7 5977 bp 58.47 9.30 96.12
cn_combo_scaffold_4758 CNBR_UNK_434
Species: R_Alphaproteobacteria_66_14 (50%)
12 12359 bp 64.36 13.12 96.10
cn_combo_scaffold_11944 CNBR_UNK_347a
Species: Verminephrobacter eiseniae (50%)
8 5339 bp 65.69 11.78 96.09
cn_combo_scaffold_8678 CNBR_UNK_153
Class: Betaproteobacteria (53.85%)
13 7229 bp 57.45 9.16 96.07
cn_combo_scaffold_8796 CNBR_UNK_576
Species: Pseudoxanthomonas suwonensis (80%)
5 7148 bp 68.48 51.23 96.03
cn_combo_scaffold_4707 CNBR_UNK_428
Order: Xanthomonadales (75%)
8 12482 bp 67.55 49.33 95.97
cn_combo_scaffold_4101 CNBR_UNK_402
Species: R_Alphaproteobacteria_66_14 (72.22%)
18 14287 bp 64.14 75.53 95.96
cn_combo_scaffold_7349 CNBR_UNK_453
Species: R_Alphaproteobacteria_66_14 (92.31%)
13 11497 bp 64.58 17.07 95.95
cn_combo_scaffold_8535 CNBR_UNK_148
Species: Gemmatimonadetes bacterium KBS708 (100%)
3 7326 bp 73.16 20.22 95.95
cn_combo_scaffold_11259 CNBR_UNK_63
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 5647 bp 57.80 10.11 95.89
cn_combo_scaffold_10798 CNBR_UNK_657
Domain: Bacteria (50%)
4 5873 bp 68.11 10.28 95.88
cn_combo_scaffold_3766 CNBR_UNK_388
Species: R_Alphaproteobacteria_66_14 (85%)
20 15927 bp 66.50 16.12 95.86
cn_combo_scaffold_12286 CNBR_UNK_713
Species: Erythrobacter sp. JL475 (66.67%)
3 5203 bp 61.56 8.90 95.83
cn_combo_scaffold_2954 CNBR_UNK_365
Phylum: Proteobacteria (73.68%)
19 19182 bp 56.66 28.74 95.80
cn_combo_scaffold_22633 CNBR_UNK_262
Species: Inquilinus limosus (100%)
6 5042 bp 65.33 10.39 95.80
cn_combo_scaffold_11507 CNBR_UNK_226
Genus: Devosia (66.67%)
6 5526 bp 64.75 11.04 95.77
cn_combo_scaffold_12346 CNBR_UNK_252 6 5179 bp 65.94 11.51 95.75
cn_combo_scaffold_3484 CNBR_UNK_383
Phylum: Proteobacteria (73.33%)
15 16491 bp 64.62 24.21 95.74
cn_combo_scaffold_6125 CNBR_UNK_485
Species: RHI_Rhodobacterales_62_75 (50%)
12 9836 bp 58.20 17.69 95.74
cn_combo_scaffold_2750 CNBR_UNK_359b
Species: R_Alphaproteobacteria_66_14 (72.22%)
18 20350 bp 64.82 15.16 95.71
cn_combo_scaffold_10967 CNBR_UNK_663
Phylum: Proteobacteria (71.43%)
7 5784 bp 63.28 25.17 95.70
cn_combo_scaffold_6977 CNBR_UNK_122
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 8759 bp 64.48 17.44 95.66
cn_combo_scaffold_8145 CNBR_UNK_142
Class: Betaproteobacteria (55.56%)
9 7638 bp 58.56 12.91 95.60
cn_combo_scaffold_8583 CNBR_UNK_566
Class: Gammaproteobacteria (66.67%)
9 7294 bp 67.25 104.58 95.59
cn_combo_scaffold_4106 CNBR_UNK_403
Order: Rhizobiales (62.5%)
16 14269 bp 67.43 11.52 95.58
cn_combo_scaffold_4513 CNBR_UNK_421
Order: Rhizobiales (53.85%)
13 13008 bp 66.44 12.55 95.50
cn_combo_scaffold_11865 CNBR_UNK_689
Genus: Devosia (50%)
6 5372 bp 64.37 12.01 95.50
cn_combo_scaffold_9877 CNBR_UNK_621
Order: Chromatiales (50%)
4 6393 bp 63.21 111.67 95.50
cn_combo_scaffold_11612 CNBR_UNK_344a
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 5483 bp 60.55 12.68 95.48
cn_combo_scaffold_2527 CNBR_UNK_351b
Phylum: Proteobacteria (75%)
24 22189 bp 62.22 60.92 95.45
cn_combo_scaffold_34486 CNBR_UNK_701
Order: Burkholderiales (50%)
6 5275 bp 60.87 94.60 95.43
cn_combo_scaffold_12814 CNBR_UNK_47
Genus: Rhodanobacter (50%)
4 5011 bp 65.54 12.63 95.43
cn_combo_scaffold_4606 CNBR_UNK_423
Species: R_Alphaproteobacteria_66_14 (69.23%)
13 12770 bp 66.20 15.79 95.43
cn_combo_scaffold_11163 CNBR_UNK_217 10 5694 bp 63.01 53.23 95.42
cn_combo_scaffold_12195 CNBR_UNK_643
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 6062 bp 65.92 12.67 95.41
cn_combo_scaffold_6095 CNBR_UNK_482
Species: R_Alphaproteobacteria_66_14 (76.92%)
13 9883 bp 64.62 15.15 95.41
cn_combo_scaffold_1768 CNBR_UNK_340b
Class: Betaproteobacteria (51.52%)
33 30275 bp 67.98 21.38 95.39
cn_combo_scaffold_11155 CNBR_UNK_216
Domain: Bacteria (50%)
6 5696 bp 54.37 7.16 95.38
cn_combo_scaffold_11632 CNBR_UNK_678
Order: Rhizobiales (80%)
5 5474 bp 70.64 11.13 95.36
cn_combo_scaffold_7895 CNBR_UNK_57
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 7848 bp 64.69 35.58 95.34
cn_combo_scaffold_7675 CNBR_UNK_519
Class: Betaproteobacteria (50%)
10 8674 bp 62.44 31.05 95.32
cn_combo_scaffold_7683 CNBR_UNK_103
Domain: Bacteria (50%)
16 11768 bp 64.97 12.02 95.32
cn_combo_scaffold_12144 CNBR_UNK_244
Domain: Bacteria (83.33%)
6 5253 bp 63.32 123.13 95.32
cn_combo_scaffold_1350 CNBR_UNK_84
Phylum: Proteobacteria (78.95%)
38 37964 bp 66.20 25.45 95.30
cn_combo_scaffold_20185 CNBR_UNK_13
Order: Burkholderiales (100%)
4 5227 bp 61.66 38.72 95.27
cn_combo_scaffold_1521 CNBR_UNK_53
Phylum: Proteobacteria (76%)
25 33886 bp 66.29 24.77 95.26
cn_combo_scaffold_11087 CNBR_UNK_211 11 5734 bp 63.88 9.47 95.22
cn_combo_scaffold_10905 CNBR_UNK_339a
Species: R_Betaproteobacteria_61_14 (50%)
4 5814 bp 62.30 7.81 95.15
cn_combo_scaffold_13260 CNBR_UNK_350a
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 5250 bp 64.67 13.24 95.14
cn_combo_scaffold_8995 CNBR_UNK_106
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 11362 bp 66.16 28.52 95.13
Displaying items 101-150 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.