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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 401-450 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9893 CNBR_UNK_516
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 8722 bp 66.51 15.35 98.13
cn_combo_scaffold_9933 CNBR_UNK_623
Order: Hydrogenophilales (62.5%)
8 6355 bp 64.97 40.06 88.94
cn_combo_scaffold_9991 CNBR_UNK_624
Genus: Devosia (50%)
8 6321 bp 65.56 12.17 92.45
cn_combo_scaffold_44631 CNBR_UNK_698
Class: Gammaproteobacteria (62.5%)
8 5334 bp 67.23 139.75 99.94
cn_combo_scaffold_10119 CNBR_UNK_631
Species: GWA2_Gallionellales_60_142_curated (62.5%)
8 6258 bp 62.78 23.94 81.35
cn_combo_scaffold_10127 CNBR_UNK_633
Class: Alphaproteobacteria (50%)
8 6250 bp 65.09 16.26 92.35
cn_combo_scaffold_9115 CNBR_UNK_159 8 6899 bp 63.15 31.44 81.58
cn_combo_scaffold_7063 CNBR_UNK_521
Class: Alphaproteobacteria (50%)
8 8656 bp 64.46 15.69 93.33
cn_combo_scaffold_10216 CNBR_UNK_636
Order: Rhizobiales (50%)
8 6203 bp 66.24 12.14 84.25
cn_combo_scaffold_10287 CNBR_UNK_512
Species: R_Alphaproteobacteria_66_14 (50%)
8 8803 bp 66.86 15.99 89.83
cn_combo_scaffold_11672 CNBR_UNK_231 8 5450 bp 63.56 152.40 79.43
cn_combo_scaffold_9215 CNBR_UNK_161 8 6828 bp 65.80 24.78 93.54
cn_combo_scaffold_7216 CNBR_UNK_526
Order: Hydrogenophilales (50%)
8 8489 bp 64.60 31.29 81.60
cn_combo_scaffold_10510 CNBR_UNK_622
Species: Sphingobium baderi (87.5%)
8 6387 bp 63.86 8.96 97.18
cn_combo_scaffold_11833 CNBR_UNK_237
Phylum: Proteobacteria (50%)
8 5385 bp 63.05 9.23 87.52
cn_combo_scaffold_8929 CNBR_UNK_314
Species: GWE1_Burkholderiales_65_30_curated (75%)
8 7047 bp 63.47 12.06 92.93
cn_combo_scaffold_10583 CNBR_UNK_649
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 5989 bp 66.41 15.09 96.88
cn_combo_scaffold_6136 CNBR_UNK_115
Domain: Bacteria (50%)
8 9826 bp 36.94 14.15 82.71
cn_combo_scaffold_10619 CNBR_UNK_561
Class: Betaproteobacteria (62.5%)
8 7355 bp 64.75 23.03 92.92
cn_combo_scaffold_10652 CNBR_UNK_650
Genus: Alicycliphilus (62.5%)
8 5948 bp 65.53 22.01 86.70
cn_combo_scaffold_10684 CNBR_UNK_651
Order: Hydrogenophilales (62.5%)
8 5931 bp 68.67 21.73 90.95
cn_combo_scaffold_4707 CNBR_UNK_428
Order: Xanthomonadales (75%)
8 12482 bp 67.55 49.33 95.97
cn_combo_scaffold_10713 CNBR_UNK_653
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (87.5%)
8 5915 bp 61.03 42.94 85.05
cn_combo_scaffold_9718 CNBR_UNK_172
Phylum: Proteobacteria (50%)
8 6485 bp 65.83 11.64 81.46
cn_combo_scaffold_7732 CNBR_UNK_538
Order: Gallionellales (50%)
8 7990 bp 65.08 32.23 96.65
cn_combo_scaffold_9837 CNBR_UNK_323
Order: Rhizobiales (50%)
8 6421 bp 60.72 11.81 83.91
cn_combo_scaffold_10984 CNBR_UNK_639
Class: Gammaproteobacteria (50%)
8 6148 bp 65.76 40.83 94.52
cn_combo_scaffold_9814 CNBR_UNK_166
Phylum: Proteobacteria (50%)
8 6667 bp 54.76 590.90 64.12
cn_combo_scaffold_11223 CNBR_UNK_670
Phylum: Proteobacteria (87.5%)
8 5664 bp 61.46 49.12 72.30
cn_combo_scaffold_8093 CNBR_UNK_550
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 7685 bp 66.83 14.21 98.18
cn_combo_scaffold_8208 CNBR_UNK_554
Phylum: Proteobacteria (75%)
8 7587 bp 65.78 10.33 79.95
cn_combo_scaffold_12399 CNBR_UNK_253
Phylum: Proteobacteria (50%)
8 5163 bp 63.01 7.67 75.89
cn_combo_scaffold_11598 CNBR_UNK_190
Phylum: Proteobacteria (50%)
8 6090 bp 65.25 1564.76 69.51
cn_combo_scaffold_11024 CNBR_UNK_299
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 7891 bp 65.39 14.78 92.38
cn_combo_scaffold_10209 CNBR_UNK_185
Domain: Bacteria (62.5%)
8 6208 bp 62.95 10.26 77.37
cn_combo_scaffold_8416 CNBR_UNK_558
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 7416 bp 63.74 15.93 85.11
cn_combo_scaffold_11838 CNBR_UNK_688
Class: Betaproteobacteria (62.5%)
8 5384 bp 47.38 9.66 75.56
cn_combo_scaffold_8591 CNBR_UNK_568
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 7287 bp 65.47 14.35 96.38
cn_combo_scaffold_8598 CNBR_UNK_570
Class: Betaproteobacteria (50%)
8 7283 bp 62.19 60.24 80.71
cn_combo_scaffold_7626 CNBR_UNK_131
Domain: Bacteria (62.5%)
8 8090 bp 65.32 47.00 85.81
cn_combo_scaffold_11944 CNBR_UNK_347a
Species: Verminephrobacter eiseniae (50%)
8 5339 bp 65.69 11.78 96.09
cn_combo_scaffold_12195 CNBR_UNK_643
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 6062 bp 65.92 12.67 95.41
cn_combo_scaffold_12247 CNBR_UNK_708
Class: Alphaproteobacteria (62.5%)
8 5216 bp 60.35 8.86 90.87
cn_combo_scaffold_8815 CNBR_UNK_577
Class: Alphaproteobacteria (50%)
8 7137 bp 67.27 13.10 81.97
cn_combo_scaffold_8886 CNBR_UNK_580
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 7076 bp 65.04 16.37 91.32
cn_combo_scaffold_12271 CNBR_UNK_711
Class: Gammaproteobacteria (50%)
8 5210 bp 71.21 51.80 83.72
cn_combo_scaffold_13039 CNBR_UNK_319
Order: Burkholderiales (57.14%)
7 6594 bp 62.24 10.07 80.48
cn_combo_scaffold_13260 CNBR_UNK_350a
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 5250 bp 64.67 13.24 95.14
cn_combo_scaffold_14194 CNBR_UNK_179
Domain: Bacteria (71.43%)
7 6286 bp 64.38 11.22 92.30
cn_combo_scaffold_9688 CNBR_UNK_49
Species: Microbacterium mangrovi (57.14%)
7 6504 bp 64.54 9.56 91.01
Displaying items 401-450 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.