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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 351-400 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5619 CNBR_UNK_468
Genus: Nitrosospira (55.56%)
9 10604 bp 54.70 36.26 78.42
cn_combo_scaffold_8512 CNBR_UNK_564
Class: Alphaproteobacteria (55.56%)
9 7343 bp 63.50 13.59 92.46
cn_combo_scaffold_8514 CNBR_UNK_565
Species: Stenotrophomonas maltophilia (55.56%)
9 7341 bp 65.02 41.59 89.13
cn_combo_scaffold_11891 CNBR_UNK_693
Genus: Devosia (55.56%)
9 5360 bp 63.10 11.88 78.30
cn_combo_scaffold_8493 CNBR_UNK_562
Class: Gammaproteobacteria (55.56%)
9 7354 bp 59.15 319.04 69.06
cn_combo_scaffold_11919 CNBR_UNK_695
Domain: Bacteria (55.56%)
9 5347 bp 64.93 10.42 100.32
cn_combo_scaffold_5728 CNBR_UNK_471
Class: Betaproteobacteria (66.67%)
9 10420 bp 62.00 105.98 96.42
cn_combo_scaffold_5762 CNBR_UNK_472
Phylum: Proteobacteria (77.78%)
9 10373 bp 66.72 12.88 89.28
cn_combo_scaffold_8583 CNBR_UNK_566
Class: Gammaproteobacteria (66.67%)
9 7294 bp 67.25 104.58 95.59
cn_combo_scaffold_10493 CNBR_UNK_193
Order: Rhizobiales (66.67%)
9 6036 bp 57.87 8.04 84.05
cn_combo_scaffold_7650 CNBR_UNK_133 9 8062 bp 44.19 10.34 79.93
cn_combo_scaffold_8649 CNBR_UNK_571
Order: Sphingomonadales (77.78%)
9 7248 bp 58.24 19.22 75.99
cn_combo_scaffold_8733 CNBR_UNK_573
Class: Betaproteobacteria (77.78%)
9 7187 bp 63.35 25.11 84.40
cn_combo_scaffold_8781 CNBR_UNK_575
Order: Burkholderiales (66.67%)
9 7157 bp 66.08 320.86 87.56
cn_combo_scaffold_8876 CNBR_UNK_579
Phylum: Proteobacteria (66.67%)
9 7080 bp 57.68 28.26 76.82
cn_combo_scaffold_8954 CNBR_UNK_583
Phylum: Proteobacteria (100%)
8 7031 bp 69.61 35.51 100.74
cn_combo_scaffold_12274 CNBR_UNK_712
Order: Hydrogenophilales (50%)
8 5209 bp 62.95 194.66 90.71
cn_combo_scaffold_12272 CNBR_UNK_50
Domain: Bacteria (75%)
8 5210 bp 59.16 6.78 85.39
cn_combo_scaffold_9091 CNBR_UNK_590
Class: Alphaproteobacteria (50%)
8 6921 bp 65.81 11.43 89.29
cn_combo_scaffold_12450 CNBR_UNK_717
Species: R_Burkholderiales_69_20 (62.5%)
8 5143 bp 67.96 152.21 82.31
cn_combo_scaffold_9131 CNBR_UNK_594
Phylum: Proteobacteria (75%)
8 6888 bp 62.78 13.76 88.15
cn_combo_scaffold_9176 CNBR_UNK_595
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 6858 bp 65.75 41.35 93.66
cn_combo_scaffold_9208 CNBR_UNK_597
Species: Devosia geojensis (62.5%)
8 6834 bp 66.01 12.51 94.69
cn_combo_scaffold_9259 CNBR_UNK_600
Order: Rhizobiales (62.5%)
8 6784 bp 69.12 11.63 85.79
cn_combo_scaffold_9255 CNBR_UNK_599
Genus: Thiobacillus (50%)
8 6789 bp 62.10 23.98 81.56
cn_combo_scaffold_8316 CNBR_UNK_143b 8 7508 bp 62.17 9.72 77.92
cn_combo_scaffold_19268 CNBR_UNK_192
Phylum: Proteobacteria (50%)
8 6055 bp 58.20 10.72 78.53
cn_combo_scaffold_9345 CNBR_UNK_602
Order: Burkholderiales (62.5%)
8 6713 bp 60.55 101.49 86.38
cn_combo_scaffold_9426 CNBR_UNK_604
Order: Rhodospirillales (50%)
8 6664 bp 63.09 14.74 93.05
cn_combo_scaffold_13713 CNBR_UNK_660
Order: Hydrogenophilales (50%)
8 5840 bp 58.78 171.95 76.39
cn_combo_scaffold_8425 CNBR_UNK_146
Domain: Bacteria (50%)
8 7409 bp 66.22 11.74 77.18
cn_combo_scaffold_6575 CNBR_UNK_504
Class: Alphaproteobacteria (62.5%)
8 9227 bp 60.00 8.03 86.03
cn_combo_scaffold_14319 CNBR_UNK_46
Class: Betaproteobacteria (50%)
8 5460 bp 67.67 9.80 84.73
cn_combo_scaffold_9491 CNBR_UNK_608
Species: R_Alphaproteobacteria_66_14 (50%)
8 6631 bp 65.27 16.69 92.16
cn_combo_scaffold_27381 CNBR_UNK_197
Phylum: Proteobacteria (87.5%)
8 5996 bp 63.99 193.75 96.91
cn_combo_scaffold_3408 CNBR_UNK_379
Class: Betaproteobacteria (62.5%)
8 16936 bp 57.04 22.14 91.85
cn_combo_scaffold_9534 CNBR_UNK_609
Phylum: Proteobacteria (50%)
8 6597 bp 69.06 11.55 87.72
cn_combo_scaffold_28100 CNBR_UNK_250
Class: Betaproteobacteria (50%)
8 5191 bp 64.21 1186.98 83.11
cn_combo_scaffold_14815 CNBR_UNK_535
Class: Alphaproteobacteria (50%)
8 8079 bp 65.28 10.88 85.82
cn_combo_scaffold_8603 CNBR_UNK_150
Domain: Bacteria (50%)
8 7278 bp 45.42 9.18 89.75
cn_combo_scaffold_11239 CNBR_UNK_219 8 5654 bp 51.54 59.78 58.52
cn_combo_scaffold_6656 CNBR_UNK_509
Order: Burkholderiales (62.5%)
8 9131 bp 60.15 24.70 94.79
cn_combo_scaffold_9738 CNBR_UNK_615
Species: R_Alphaproteobacteria_66_14 (75%)
8 6477 bp 65.68 14.16 93.21
cn_combo_scaffold_15883 CNBR_UNK_607
Species: R_Alphaproteobacteria_66_14 (50%)
8 6632 bp 64.38 13.63 93.41
cn_combo_scaffold_9651 CNBR_UNK_592
Order: Hydrogenophilales (75%)
8 6912 bp 62.89 213.01 81.60
cn_combo_scaffold_9756 CNBR_UNK_616
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 6468 bp 60.08 13.06 94.53
cn_combo_scaffold_5132 CHIM_14
Class: Betaproteobacteria (75%)
8 11482 bp 60.22 180.92 87.40
cn_combo_scaffold_8725 CNBR_UNK_154 8 7190 bp 65.95 31.32 82.11
cn_combo_scaffold_6791 CNBR_UNK_478
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
8 10061 bp 60.98 46.38 97.51
cn_combo_scaffold_18554 CNBR_UNK_540
Order: Hydrogenophilales (75%)
8 7916 bp 62.51 211.56 89.67
Displaying items 351-400 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.