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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 301-350 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_6124 CNBR_UNK_484
Phylum: Proteobacteria (55.56%)
9 9836 bp 66.78 12.57 93.73
cn_combo_scaffold_9066 CNBR_UNK_588
Class: Alphaproteobacteria (55.56%)
9 6943 bp 63.04 14.11 75.57
cn_combo_scaffold_9069 CNBR_UNK_589
Class: Betaproteobacteria (66.67%)
9 6942 bp 67.00 33.00 88.59
cn_combo_scaffold_12494 CNBR_UNK_659
Species: Paracoccus sp. 361 (55.56%)
9 5847 bp 58.25 33.86 80.09
cn_combo_scaffold_8086 CNBR_UNK_141
Domain: Bacteria (66.67%)
9 7688 bp 63.51 12.57 92.91
cn_combo_scaffold_6373 CNBR_UNK_493
Domain: Bacteria (88.89%)
9 9489 bp 62.43 10.49 86.31
cn_combo_scaffold_5484 CNBR_UNK_284
Order: Burkholderiales (88.89%)
9 10848 bp 67.68 13.33 94.77
cn_combo_scaffold_8145 CNBR_UNK_142
Class: Betaproteobacteria (55.56%)
9 7638 bp 58.56 12.91 95.60
cn_combo_scaffold_5509 CNBR_UNK_285
Class: Betaproteobacteria (55.56%)
9 10800 bp 64.61 12.78 79.94
cn_combo_scaffold_6443 CNBR_UNK_497
Species: Pseudomonas aeruginosa (77.78%)
9 9387 bp 65.75 14.43 88.33
cn_combo_scaffold_9364 CNBR_UNK_603
Phylum: Proteobacteria (66.67%)
9 6705 bp 63.50 11.92 81.04
cn_combo_scaffold_14001 CNBR_UNK_646
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 6041 bp 60.07 313.28 87.65
cn_combo_scaffold_24022 CNBR_UNK_201 9 5889 bp 54.66 91.51 68.01
cn_combo_scaffold_4763 CNBR_UNK_96 9 13372 bp 56.36 323.90 92.10
cn_combo_scaffold_6579 CNBR_UNK_291
Species: R_Alphaproteobacteria_66_14 (55.56%)
9 9218 bp 65.81 16.78 97.64
cn_combo_scaffold_14615 CNBR_UNK_533
Order: Hydrogenophilales (55.56%)
9 8175 bp 61.11 346.72 83.23
cn_combo_scaffold_6622 CNBR_UNK_507
Species: R_Alphaproteobacteria_66_14 (88.89%)
9 9159 bp 64.50 14.54 98.43
cn_combo_scaffold_8606 CNBR_UNK_151 9 7276 bp 70.33 8.85 94.96
cn_combo_scaffold_9686 CNBR_UNK_612
Phylum: Proteobacteria (77.78%)
9 6504 bp 56.32 46.69 91.01
cn_combo_scaffold_9804 CNBR_UNK_617
Class: Alphaproteobacteria (77.78%)
9 6437 bp 59.92 8.92 98.10
cn_combo_scaffold_9831 CNBR_UNK_618
Class: Betaproteobacteria (66.67%)
9 6426 bp 56.91 16.45 82.31
cn_combo_scaffold_20671 CNBR_UNK_598
Class: Betaproteobacteria (55.56%)
9 6795 bp 57.66 348.49 80.01
cn_combo_scaffold_25604 CNBR_UNK_613
Class: Betaproteobacteria (77.78%)
9 6493 bp 62.74 206.96 76.74
cn_combo_scaffold_30851 CNBR_UNK_697
Order: Hydrogenophilales (88.89%)
9 5341 bp 59.86 183.86 70.60
cn_combo_scaffold_10112 CNBR_UNK_630
Order: Burkholderiales (55.56%)
9 6262 bp 60.12 8.37 92.56
cn_combo_scaffold_8108 CNBR_UNK_301
Species: R_Alphaproteobacteria_66_14 (77.78%)
9 7670 bp 65.41 15.07 95.08
cn_combo_scaffold_9112 CNBR_UNK_158 9 6906 bp 62.03 23.92 84.32
cn_combo_scaffold_10214 CNBR_UNK_635
Order: Hydrogenophilales (66.67%)
9 6204 bp 64.78 40.41 89.02
cn_combo_scaffold_5938 CNBR_UNK_26
Species: GWF1_Xanthomonadales_69_6_curated (88.89%)
9 10086 bp 67.64 288.44 94.47
cn_combo_scaffold_8380 CNBR_UNK_306
Class: Betaproteobacteria (55.56%)
9 7449 bp 59.94 17.98 89.45
cn_combo_scaffold_10316 CNBR_UNK_640
Phylum: Proteobacteria (77.78%)
9 6140 bp 66.48 12.33 91.76
cn_combo_scaffold_8398 CNBR_UNK_307
Order: Burkholderiales (77.78%)
9 7432 bp 67.10 12.38 93.73
cn_combo_scaffold_7187 CNBR_UNK_525
Class: Betaproteobacteria (66.67%)
9 8512 bp 60.90 27.66 78.77
cn_combo_scaffold_9228 CNBR_UNK_162
Phylum: Proteobacteria (77.78%)
9 6816 bp 62.18 12.09 83.67
cn_combo_scaffold_9269 CNBR_UNK_163
Genus: Devosia (66.67%)
9 6775 bp 65.62 11.73 90.42
cn_combo_scaffold_10359 CNBR_UNK_591
Class: Betaproteobacteria (66.67%)
9 6917 bp 65.78 42.89 91.14
cn_combo_scaffold_5982 CNBR_UNK_110
Class: Alphaproteobacteria (77.78%)
9 10380 bp 59.43 13.63 89.60
cn_combo_scaffold_9411 CNBR_UNK_58
Species: Thauera sp. MZ1T (77.78%)
9 6673 bp 62.63 64.02 99.45
cn_combo_scaffold_7491 CNBR_UNK_530
Class: Betaproteobacteria (55.56%)
9 8218 bp 57.59 10.84 83.34
cn_combo_scaffold_9102 CNBR_UNK_318
Order: Burkholderiales (100%)
9 6914 bp 63.73 11.34 87.21
cn_combo_scaffold_7539 CNBR_UNK_534
Order: Burkholderiales (55.56%)
9 8169 bp 58.91 26.40 85.31
cn_combo_scaffold_9157 CNBR_UNK_288
Order: Burkholderiales (55.56%)
9 9719 bp 55.60 15.76 94.08
cn_combo_scaffold_7696 CNBR_UNK_537
Species: Bosea sp. LC85 (88.89%)
9 8015 bp 65.03 14.51 94.92
cn_combo_scaffold_10877 CNBR_UNK_557 9 7548 bp 67.00 12.37 82.23
cn_combo_scaffold_7955 CNBR_UNK_543
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
9 7791 bp 58.44 43.86 92.80
cn_combo_scaffold_8022 CNBR_UNK_546
Class: Gammaproteobacteria (66.67%)
9 7749 bp 58.46 30.18 93.53
cn_combo_scaffold_10615 CNBR_UNK_331
Class: Betaproteobacteria (55.56%)
9 5971 bp 68.45 12.90 93.50
cn_combo_scaffold_8168 CNBR_UNK_553
Class: Betaproteobacteria (77.78%)
9 7622 bp 60.75 10.64 92.18
cn_combo_scaffold_8239 CNBR_UNK_555
Domain: Bacteria (77.78%)
9 7565 bp 63.65 33.26 74.24
cn_combo_scaffold_7516 CNBR_UNK_129 9 8193 bp 62.58 9.57 91.03
Displaying items 301-350 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.