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scnpilot_p_inoc_scaffold_257_172

Organism: SCNpilot_P_inoc_Acidovorax_64_34

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 14 / 38
Location: 195949..196200

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0E5_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 77.0
  • Bit_score: 83
  • Evalue 1.30e-13
helix-turn-helix domain protein similarity KEGG
DB: KEGG
  • Identity: 53.2
  • Coverage: 77.0
  • Bit_score: 83
  • Evalue 3.50e-14
Helix-turn-helix domain protein {ECO:0000313|EMBL:ACS22489.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax par similarity UNIPROT
DB: UniProtKB
  • Identity: 53.2
  • Coverage: 77.0
  • Bit_score: 83
  • Evalue 1.70e-13

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 252
ATGGGCTCCTTTTCGCCCATGCAGAAGACGCTCTACAGTCGCCAGTACCAGCACATGCTCAAGTTGCTGAGGGAGAAGCGCGTTCATTCCGAGGTGAGCCAAGCTGAACTGGCGAAGCGGCTGGAATGGACGCAGGCGGAGGTGAGCAAGTGCGAAACTGGGGTGAGGCGGCTGGATGTCATCGAACTCAAGCTATGGGTTGAGGCACTGGACGGCGATCTGTCTGCCTTTGTGCAGGATCTGCAGGGATAG
PROTEIN sequence
Length: 84
MGSFSPMQKTLYSRQYQHMLKLLREKRVHSEVSQAELAKRLEWTQAEVSKCETGVRRLDVIELKLWVEALDGDLSAFVQDLQG*