ggKbase home page

scnpilot_p_inoc_scaffold_187_120

Organism: SCNpilot_P_inoc_Novosphingobium_62_280

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(125134..125712)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E6802D similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 188.0
  • Bit_score: 281
  • Evalue 7.20e-73
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD49245.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium. similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 189.0
  • Bit_score: 280
  • Evalue 2.20e-72
FecI-like sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 72.7
  • Coverage: 183.0
  • Bit_score: 275
  • Evalue 1.10e-71

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGAGCAAGGTCGAAGCCCAGCCGCCGGATTTCAAGCGAGAGCTGACGCAGGTCGTGCCGCATTTGCGCGCCTTTGCGCGCGGGCTTTGCGGGCGGCCCGATCTGGCCGACGATCTGGTGCAGGACACGCTGCTGCGCGCATGGGCCGCGCGCGACCGCTTTGTGCCGGGCACCTCGATCCGGGCCTGGACCTTCACGATCCTGCGCAATGCATGGTTTACCGAAATGCGGCGCAACCGCTTTCGCGCCGACTATGACGAGACCGTCGCCGACCGTATCCTGACCTCGCCCGCGGGGCAGGAAGCGCCGCTGCATCTGGCCGATCTGTCGCGGGCCTTGATGGAACTGCCCGCCGAAAGACGCGAAGCGCTGCTGCTGGTGGGCGCGGGCGGCTTTTCCTATGAGGAAGCGGCTGCGATCTGCGGCTGCGCAGTGGGCACGATCAAGAGCCGGGTGGGCCGCGGCCGCGCGCAATTGACCGCGATGATCGAGGAAGGGCGCATCCCCACGCGCGGCAATGCCAGCGAGAGCAGCCAGGCGCTGATGGCCGAACTCGACCGGATCACGCCCAAGGACTAA
PROTEIN sequence
Length: 193
MSKVEAQPPDFKRELTQVVPHLRAFARGLCGRPDLADDLVQDTLLRAWAARDRFVPGTSIRAWTFTILRNAWFTEMRRNRFRADYDETVADRILTSPAGQEAPLHLADLSRALMELPAERREALLLVGAGGFSYEEAAAICGCAVGTIKSRVGRGRAQLTAMIEEGRIPTRGNASESSQALMAELDRITPKD*