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cg2_3.0_scaffold_86_c_29

Organism: CG2_30_FULL_Comamonadaceae_59_20_curated

near complete RP 49 / 55 MC: 2 BSCG 47 / 51 ASCG 13 / 38 MC: 1
Location: comp(22876..23520)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CSE8_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 202.0
  • Bit_score: 306
  • Evalue 1.80e-80
  • rbh
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CG_Rhodof_02 similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 214.0
  • Bit_score: 418
  • Evalue 7.70e-114
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 74.8
  • Coverage: 202.0
  • Bit_score: 306
  • Evalue 5.00e-81

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Taxonomy

CG_Rhodof_02 → Rhodoferax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 645
ATGTCTGAACAAGAAAAGCCCGGGCTGGATACGCAGTCGCAATCCGGCAACAGCGATGCCCTGTTAGTGGAGCGGGCCGTTGCGGGCGATCAGCGTGCCTTCGAGTTGCTGGTGATCAAGTACCAGCGCCGCATTGAGCGGCTGATAGGGCGCATGGTGCGTGATACCAATCTGGTCGAGGACATTGCCCAGGAAACTTTTATTCGCGCTTACCGGGCGCTGCACCAATTTCGCGGCGATGCCCAGTTTTACACCTGGCTTTACCGTATTGCCGTCAATACCGCCAAGCGCTTTCTGCTCAAACTCAAGAACGACCCGGCCGTTTTTCAGAGCAGCTTGCAAGCCAGTGATGAAGATGATGAAACTTTTCAGCGCAGAAGTGAACCAAGCACAGATGAAACGCCCGAGTCGGTGCTGGCAGCCAAAGAAATTGGCCAGGCTGTAAATGCCGCGCTGGAGGCGCTACCTGATGACTTGAAACAGGCGCTGACCCTGCGTGAAATGGATGGATTGAGCTACGAGGAAATTGCTGAAGTGATGAATTGCCCATTAGGAACCGTGCGCTCGCGCATATTCAGAGCGCGCGAAGCGGTATCCGCCAGGATCAAACCCATGCTGGACAAGCAAGGCGGCAAGCGCTGGTAG
PROTEIN sequence
Length: 215
MSEQEKPGLDTQSQSGNSDALLVERAVAGDQRAFELLVIKYQRRIERLIGRMVRDTNLVEDIAQETFIRAYRALHQFRGDAQFYTWLYRIAVNTAKRFLLKLKNDPAVFQSSLQASDEDDETFQRRSEPSTDETPESVLAAKEIGQAVNAALEALPDDLKQALTLREMDGLSYEEIAEVMNCPLGTVRSRIFRAREAVSARIKPMLDKQGGKRW*