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cnbg_combo_scaffold_1321

Alias: Burk15_99

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cnbg_combo_scaffold_1321_1
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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335..676
-----------------
DNA (342bp)
protein (114aa)
Ribosomal subunit interface protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRY1_9BURK
Ribosomal subunit interface protein {ECO:0000313|EMBL:EHR73428.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
yfiA; sigma-54 modulation protein YfiA
cnbg_combo_scaffold_1321_2
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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891..1361
-----------------
DNA (471bp)
protein (157aa)
ptsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN (EC:2.7.1.69)
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:BAL97845.1}; EC=2.7.1.69 {ECO:0000313|EMBL:BAL97845.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXV8_RUBGI
cnbg_combo_scaffold_1321_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1468..2415
-----------------
DNA (948bp)
protein (316aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SA
hprK; HPr kinase/phosphorylase HprK (EC:2.7.11.- 2.7.4.-) rbh
HPr kinase/phosphorylase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLK8_9BURK
cnbg_combo_scaffold_1321_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2444..2872)
-----------------
DNA (429bp)
protein (143aa)
Ferric uptake regulation protein Fur n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW0_RUBGI
fur; ferric uptake regulation protein Fur
Ferric uptake regulation protein Fur {ECO:0000313|EMBL:BAL97847.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (s
cnbg_combo_scaffold_1321_5
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2943..3455
-----------------
DNA (513bp)
protein (171aa)
Small protein A (TmRNA-binding)-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SC95_METPP
small protein A (tmRNA-binding)-like protein
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" so
cnbg_combo_scaffold_1321_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3455..4267
-----------------
DNA (813bp)
protein (271aa)
dapB; dihydrodipicolinate reductase DapB (EC:1.3.1.26) rbh
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW2_RUBGI
cnbg_combo_scaffold_1321_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4278..4979
-----------------
DNA (702bp)
protein (234aa)
Biopolymer transport protein ExbB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW3_RUBGI
transport-related membrane protein; K03561 biopolymer transport protein ExbB Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
exbB; biopolymer transport protein ExbB rbh
cnbg_combo_scaffold_1321_8
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4982..5416
-----------------
DNA (435bp)
protein (145aa)
Biopolymer transport protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WSC6_9BURK
Biopolymer transport protein {ECO:0000313|EMBL:EHR73435.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
exbD; biopolymer transport protein ExbD
cnbg_combo_scaffold_1321_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5431..6807)
-----------------
DNA (1377bp)
protein (459aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JNN0_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA48399.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source
cnbg_combo_scaffold_1321_10
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6777..6971)
-----------------
DNA (195bp)
protein (65aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
cnbg_combo_scaffold_1321_11
unknown

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comp(7299..7574)
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

cnbg_combo_scaffold_1321_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7712..8023
-----------------
DNA (312bp)
protein (104aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=983917 species="Bacteria; Proteob
Leucine--tRNA ligase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW5_RUBGI
cnbg_combo_scaffold_1321_13
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8010..8498
-----------------
DNA (489bp)
protein (163aa)
Putative LPS-assembly lipoprotein LptE n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW6_RUBGI
lipoprotein B; K03643 LPS-assembly lipoprotein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
lptE; putative LPS-assembly lipoprotein LptE
cnbg_combo_scaffold_1321_14
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8498..9562
-----------------
DNA (1065bp)
protein (355aa)
holA; DNA polymerase III delta subunit HolA (EC:2.7.7.7) rbh
DNA polymerase III subunit delta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLL6_9BURK
DNA polymerase III subunit delta {ECO:0000313|EMBL:EGJ09234.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA
cnbg_combo_scaffold_1321_15
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9580..11106
-----------------
DNA (1527bp)
protein (509aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI24_9BURK
4-coumarate--CoA ligase Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
4-coumarate--CoA ligase
cnbg_combo_scaffold_1321_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11213..12094)
-----------------
DNA (882bp)
protein (294aa)
D-isomer specific 2-hydroxyacid dehydrogenase family protein (EC:1.1.1.95) rbh
D-isomer specific 2-hydroxyacid dehydrogenase family protein {ECO:0000313|EMBL:BAL97855.1}; EC=1.1.1.95 {ECO:0000313|EMBL:BAL97855.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacter
D-isomer specific 2-hydroxyacid dehydrogenase family protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXW8_RUBGI
cnbg_combo_scaffold_1321_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12091..12579)
-----------------
DNA (489bp)
protein (163aa)
CinA domain-containing protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLL8_9BURK
CinA domain-containing protein {ECO:0000313|EMBL:EGJ09236.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2
CinA domain-containing protein
cnbg_combo_scaffold_1321_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12567..13100)
-----------------
DNA (534bp)
protein (178aa)
phosphatidylglycerophosphatase (EC:3.1.3.27); K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
pgpA; phosphatidylglycerophosphatase A PgpA (EC:3.1.3.27)
Phosphatidylglycerophosphatase A-like protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WSD4_9BURK
cnbg_combo_scaffold_1321_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13285..14244)
-----------------
DNA (960bp)
protein (320aa)
thiL; thiamine-monophosphate kinase ThiL (EC:2.7.4.16) rbh
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
Thiamine-monophosphate kinase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXX1_RUBGI
cnbg_combo_scaffold_1321_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14396..16690
-----------------
DNA (2295bp)
protein (765aa)
malic enzyme (EC:1.1.1.40 2.3.1.8)
Malic enzyme n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WSD8_9BURK
Malic enzyme {ECO:0000313|EMBL:EHR73447.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cnbg_combo_scaffold_1321_21
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16817..17233
-----------------
DNA (417bp)
protein (139aa)
guanyl-specific ribonuclease Sa-like protein (EC:3.1.27.3)
Guanyl-specific ribonuclease Sa-like protein {ECO:0000313|EMBL:BAL97862.1}; EC=3.1.27.3 {ECO:0000313|EMBL:BAL97862.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
Guanyl-specific ribonuclease Sa-like protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXX5_RUBGI
cnbg_combo_scaffold_1321_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17282..17677
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXX6_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97863.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cnbg_combo_scaffold_1321_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17719..17853
-----------------
DNA (135bp)
protein (45aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXX7_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97864.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cnbg_combo_scaffold_1321_24
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17850..18014)
-----------------
DNA (165bp)
protein (55aa)
rsmA; ribosomal RNA small subunit methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLM6_9BURK
Displaying 24 items

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