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scnpilot_p_inoc_scaffold_844_90

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(93257..93901)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IF24_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 199.0
  • Bit_score: 223
  • Evalue 2.60e-55
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KHK93513.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov similarity UNIPROT
DB: UniProtKB
  • Identity: 57.1
  • Coverage: 203.0
  • Bit_score: 224
  • Evalue 1.60e-55
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 56.3
  • Coverage: 197.0
  • Bit_score: 223
  • Evalue 7.30e-56

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Taxonomy

Novosphingobium malaysiense → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 645
ATGAAGCCATTCGGACCGGGGCACACTATGGTTCCCGATGAAAATGCGGCACAGGTGACGGGCCTTGCGCAGGTGCTTGTTGAGCATCGCGCCGAATTGCTACGTTTCCTTACCGCACGCTGCGGCAATGCTGCCGAGGCGGAAGATCTCTTGCAGGAATTATGGATCAAGGCTTCCCGCCAGCCTAGCGGGCCGATTGGCGATGGACGCGCCTATCTGTTCCGCATGGCCAATAATCTCGTGCTCGATGCGCTGAAAATGCAGCGCCGGGCAATGGCTCGCGACCGCAAATGGATCGTGGAGGAAACCGGCATGGAAGGGCAAGCGGAAGACCGCCCGGACCCGGCCGCGAGCGCGGAGGAGGAAATTGCCCGCAGGCAGGAAGCCGAAATGCTGCGCAAAGCGGTGGCAAGCCTGCCGCCGGGCGCGCGCGAGGCGCTGCGGCTCTATCGTTTCGAGGGGATATCCCAGACGGAAATCGCGCAGCTTCTGGGTATCAGCCGCAGCGGCGTGGAGAAGCATCTGGCGCTGGCGATGAAACATCTGCGACGTTCGCTGGCCGACTGCGGATTTTACAATGCGGTGGCGTCTGGAAATATGGGGACGCCCGGCGGACAGGTTCCGCCTGCGGGGCAAGTGACATGA
PROTEIN sequence
Length: 215
MKPFGPGHTMVPDENAAQVTGLAQVLVEHRAELLRFLTARCGNAAEAEDLLQELWIKASRQPSGPIGDGRAYLFRMANNLVLDALKMQRRAMARDRKWIVEETGMEGQAEDRPDPAASAEEEIARRQEAEMLRKAVASLPPGAREALRLYRFEGISQTEIAQLLGISRSGVEKHLALAMKHLRRSLADCGFYNAVASGNMGTPGGQVPPAGQVT*