ggKbase home page
Advanced Search
Search Help

SCNpilot_expt_300_bf_UNK

In projects: SCNPILOT_EXPT_300_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 7.36 Longest contig: 62.15 Kbp Bin length: 51.60 Mbp GC content: 43.84 %
Contigs count: 24308 Features count: 66330 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 51 BSCG 51 / 51 MC: 49 ASCG 23 / 38 MC: 16
Displaying items 51-100 of 24308 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_8890
Domain: Metazoa (81.82%)
11 4902 bp 33.68 3.12 75.34
SCNpilot_expt_300_bf_scaffold_2871 11 4203 bp 34.98 4.54 63.17
SCNpilot_expt_300_bf_scaffold_3288
Genus: Rhodobacter (54.55%)
11 9180 bp 64.76 5.77 83.63
SCNpilot_expt_300_bf_scaffold_3556
Order: Sphingomonadales (72.73%)
11 6910 bp 62.79 4.32 76.58
SCNpilot_expt_300_bf_scaffold_2379
Species: Xylella fastidiosa (54.55%)
11 7495 bp 59.65 7.37 74.97
SCNpilot_expt_300_bf_scaffold_7517 11 5850 bp 65.11 6.05 92.00
SCNpilot_expt_300_bf_scaffold_2413 11 4594 bp 34.52 4.26 61.97
SCNpilot_expt_300_bf_scaffold_5883
Order: Sphingomonadales (72.73%)
11 6608 bp 61.00 4.63 69.78
SCNpilot_expt_300_bf_scaffold_2431 11 4580 bp 32.25 4.38 67.47
SCNpilot_expt_300_bf_scaffold_5907
Phylum: Chordata (54.55%)
11 3923 bp 37.68 3.52 70.81
SCNpilot_expt_300_bf_scaffold_8266 11 3863 bp 32.69 3.90 68.34
SCNpilot_expt_300_bf_scaffold_6205
Phylum: Chordata (63.64%)
11 4339 bp 36.25 3.70 67.69
SCNpilot_expt_300_bf_scaffold_2222
Order: Sphingobacteriales (72.73%)
11 8520 bp 41.78 5.36 86.41
SCNpilot_expt_300_bf_scaffold_4045
Species: Sphingopyxis sp. MC1 (90.91%)
11 9364 bp 61.92 5.58 85.80
SCNpilot_expt_300_bf_scaffold_5240 10 4254 bp 32.42 3.84 55.43
SCNpilot_expt_300_bf_scaffold_5005
Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)
10 9127 bp 59.36 4.76 90.49
SCNpilot_expt_300_bf_scaffold_3499
Genus: Devosia (50%)
10 3793 bp 62.17 5.76 89.77
SCNpilot_expt_300_bf_scaffold_2060
Species: Sphingopyxis sp. MC1 (100%)
10 9536 bp 66.57 6.74 89.41
SCNpilot_expt_300_bf_scaffold_6048 10 5149 bp 30.47 3.66 50.69
SCNpilot_expt_300_bf_scaffold_2344 10 4663 bp 33.52 4.25 54.36
SCNpilot_expt_300_bf_scaffold_5044 10 3988 bp 32.75 4.03 54.76
SCNpilot_expt_300_bf_scaffold_13732 10 3793 bp 33.77 3.24 56.63
SCNpilot_expt_300_bf_scaffold_3571
Class: Actinobacteria (70%)
10 4872 bp 68.80 6.03 101.17
SCNpilot_expt_300_bf_scaffold_1877
Species: Acidovorax ebreus (50%)
10 7878 bp 64.47 11.69 91.43
SCNpilot_expt_300_bf_scaffold_7275
Domain: Metazoa (50%)
10 4555 bp 32.71 3.58 60.53
SCNpilot_expt_300_bf_scaffold_970
Species: Devosia limi (90%)
10 12010 bp 61.90 6.33 88.55
SCNpilot_expt_300_bf_scaffold_3371 10 4598 bp 36.19 5.13 69.81
SCNpilot_expt_300_bf_scaffold_6194 10 4784 bp 35.24 3.83 80.83
SCNpilot_expt_300_bf_scaffold_13310
Domain: Metazoa (70%)
10 4291 bp 34.16 4.45 73.69
SCNpilot_expt_300_bf_scaffold_9530 10 4238 bp 32.66 4.09 67.82
SCNpilot_expt_300_bf_scaffold_3665
Domain: Metazoa (50%)
10 4678 bp 34.18 4.56 59.64
SCNpilot_expt_300_bf_scaffold_11886
Domain: Metazoa (80%)
10 4675 bp 32.28 3.76 70.78
SCNpilot_expt_300_bf_scaffold_3933 10 4920 bp 31.77 4.08 70.06
SCNpilot_expt_300_bf_scaffold_1216
Genus: Devosia (50%)
10 12815 bp 63.18 6.82 89.45
SCNpilot_expt_300_bf_scaffold_4067
Phylum: Chordata (70%)
10 3528 bp 33.93 4.41 79.85
SCNpilot_expt_300_bf_scaffold_11399
Class: Gammaproteobacteria (50%)
10 4278 bp 65.05 5.46 73.77
SCNpilot_expt_300_bf_scaffold_14378 9 3842 bp 60.31 3.46 61.53
SCNpilot_expt_300_bf_scaffold_4862 9 3222 bp 33.83 3.82 75.42
SCNpilot_expt_300_bf_scaffold_2540 9 4465 bp 32.72 4.33 59.73
SCNpilot_expt_300_bf_scaffold_11179 9 3310 bp 32.15 3.87 74.41
SCNpilot_expt_300_bf_scaffold_10868
Domain: Metazoa (66.67%)
9 4989 bp 34.16 3.82 59.35
SCNpilot_expt_300_bf_scaffold_7927
Genus: Sphingobacterium (66.67%)
9 4435 bp 37.59 5.04 88.21
SCNpilot_expt_300_bf_scaffold_4881 9 3217 bp 34.22 4.45 66.30
SCNpilot_expt_300_bf_scaffold_18985 9 4437 bp 32.61 3.90 67.95
SCNpilot_expt_300_bf_scaffold_17494 9 3880 bp 33.63 4.33 75.46
SCNpilot_expt_300_bf_scaffold_2559
Domain: Metazoa (55.56%)
9 4446 bp 36.55 4.06 69.16
SCNpilot_expt_300_bf_scaffold_9357 9 4549 bp 32.38 3.92 72.48
SCNpilot_expt_300_bf_scaffold_4901 9 3210 bp 60.00 4.22 90.19
SCNpilot_expt_300_bf_scaffold_3762 9 4427 bp 37.36 3.69 64.92
SCNpilot_expt_300_bf_scaffold_4654 9 4461 bp 33.31 4.28 60.39
Displaying items 51-100 of 24308 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.