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SCNpilot_solid_2_scaffold_133

Search features with annotation key words

Displaying items 121-150 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_133_118
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(120931..121422)
DNA (492bp) protein (164aa)
Transcriptional regulator, MarR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V173_9BRAD
Organic hydroperoxide resistance transcriptional regulator {ECO:0000313|EMBL:CEG10160.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" s
transcriptional regulator, MarR family
SCNpilot_solid_2_scaffold_133_119
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121578..122012
DNA (435bp) protein (145aa)
Peroxiredoxin, Ohr subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V172_9BRAD
Peroxiredoxin, Ohr subfamily {ECO:0000313|EMBL:EFI53452.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
OsmC-like protein
SCNpilot_solid_2_scaffold_133_120
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122097..123149
DNA (1053bp) protein (351aa)
Alpha/beta hydrolase fold protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V171_9BRAD rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFI53451.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sourc
epoxide hydrolase
SCNpilot_solid_2_scaffold_133_121
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123390..124172)
DNA (783bp) protein (261aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V170_9BRAD rbh
SCNpilot_solid_2_scaffold_133_122
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124342..126162)
DNA (1821bp) protein (607aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
sdhA; succinate dehydrogenase flavoprotein subunit SdhA (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase, flavoprotein subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V169_9BRAD rbh
SCNpilot_solid_2_scaffold_133_123
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126166..126573)
DNA (408bp) protein (136aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V168_9BRAD
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EFI53448.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
sdhD; succinate dehydrogenase, membrane anchor SdhD; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_solid_2_scaffold_133_124
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126570..126965)
DNA (396bp) protein (132aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVZ0_AFIFE
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EKS30358.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="A
sdhC; succinate dehydrogenase, cytochrome b subunit SdhC; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_solid_2_scaffold_133_125
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127259..127489
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V166_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53446.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_133_126
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127571..129100)
DNA (1530bp) protein (510aa)
AMP-dependent synthetase and ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V165_9BRAD rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CEG10209.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat
malonyl-CoA synthase rbh
SCNpilot_solid_2_scaffold_133_127
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129191..130387)
DNA (1197bp) protein (399aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V162_9BRAD rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI53442.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
MFS transporter protein rbh
SCNpilot_solid_2_scaffold_133_128
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130513..131625
DNA (1113bp) protein (371aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V161_9BRAD rbh
SCNpilot_solid_2_scaffold_133_129
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131869..132243)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V160_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG10214.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_133_130
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132557..133591
DNA (1035bp) protein (345aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:000
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] rbh
Aspartate-semialdehyde dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V159_9BRAD rbh
SCNpilot_solid_2_scaffold_133_131
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133655..134344)
DNA (690bp) protein (230aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Af
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V158_9BRAD rbh
SCNpilot_solid_2_scaffold_133_132
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134460..135353
DNA (894bp) protein (298aa)
citE; citrate lyase subunit beta (EC:4.1.3.6 4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] rbh
Citryl-CoA lyase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V157_9BRAD rbh
(3S)-malyl-CoA thioesterase {ECO:0000313|EMBL:CEG10217.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratc
SCNpilot_solid_2_scaffold_133_133
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135423..136028)
DNA (606bp) protein (202aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase small subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ90_AFIFE rbh
SCNpilot_solid_2_scaffold_133_134
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137080..137469
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V153_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG10220.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_133_135
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137555..138967)
DNA (1413bp) protein (471aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V152_9BRAD rbh
SCNpilot_solid_2_scaffold_133_136
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139105..139515
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ94_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30372.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glyoxalase family protein
SCNpilot_solid_2_scaffold_133_137
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(139587..139976)
DNA (390bp) protein (130aa)
50S ribosomal protein L19 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NW04_AFIFE
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_solid_2_scaffold_133_138
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140080..140862)
DNA (783bp) protein (261aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=3 Tax=Oligotropha carboxidovorans RepID=F8BGT9_OLICM rbh
SCNpilot_solid_2_scaffold_133_139
unknown

Not on your lists

comp(140859..140960)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_solid_2_scaffold_133_140
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141041..141589)
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSC2_AFIFE rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; A
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM rbh
SCNpilot_solid_2_scaffold_133_141
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(141727..142056)
DNA (330bp) protein (110aa)
30S ribosomal protein S16 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMN4_AFIFE
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_solid_2_scaffold_133_142
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(142099..143646)
DNA (1548bp) protein (516aa)
Signal recognition particle protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V146_9BRAD rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
ffh; signal recognition particle protein Ffh; K03106 signal recognition particle subunit SRP54 rbh
SCNpilot_solid_2_scaffold_133_143
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144595..145290)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPP4_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30379.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
immunogenic protein; K09807 hypothetical protein rbh
SCNpilot_solid_2_scaffold_133_144
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145302..145772)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSC6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30380.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transcription activator, effector binding
SCNpilot_solid_2_scaffold_133_145
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146354..147226
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:000
dapF; diaminopimelate epimerase DapF (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
Diaminopimelate epimerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V142_9BRAD rbh
SCNpilot_solid_2_scaffold_133_146
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147228..148490
DNA (1263bp) protein (421aa)
MiaB-like tRNA modifying enzyme n=1 Tax=Afipia sp. 1NLS2 RepID=D6V141_9BRAD rbh
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EFI53421.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;
putative 2-methylthioadenine synthase rbh
SCNpilot_solid_2_scaffold_133_147
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148603..149340)
DNA (738bp) protein (246aa)
putative RNA pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] rbh
Pseudouridine synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V140_9BRAD rbh
Pseudouridine synthase {ECO:0000313|EMBL:EFI53420.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Displaying items 121-150 of 200 in total

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