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SCNpilot_expt_500_bf_scaffold_4512

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4512_1
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..186
DNA (186bp) protein (62aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NCY1_MICTS
ribose/xylose/arabinose/galactoside ABC transporters, permease components; K10440 ribose transport system permease protein
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:KJL28813.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
SCNpilot_expt_500_bf_scaffold_4512_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

206..2005
DNA (1800bp) protein (600aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5D5D1
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EZP49922.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
GntR domain-containing protein
SCNpilot_expt_500_bf_scaffold_4512_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2090..2701)
DNA (612bp) protein (204aa)
Intracellular protease, PfpI family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDB2_MESCW rbh
Glutamine amidotransferase {ECO:0000313|EMBL:KKB86799.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_4512_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..3710)
DNA (948bp) protein (316aa)
ABC transporter, periplasmic solute-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDB3_MESCW rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB86800.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter periplasmic protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_4512_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3768..4763)
DNA (996bp) protein (332aa)
UPI0003D06366 related cluster n=1 Tax=unknown RepID=UPI0003D06366 rbh
ABC transporter permease {ECO:0000313|EMBL:KKB86801.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
sugar ABC transporter ATPase; K10440 ribose transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_4512_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4760..5662)
DNA (903bp) protein (301aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVQ8_PUSST
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB86802.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_4512_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5623..6264)
DNA (642bp) protein (214aa)
UPI0003D02452 related cluster n=1 Tax=unknown RepID=UPI0003D02452
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB86802.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC-type sugar transport system, ATPase component
SCNpilot_expt_500_bf_scaffold_4512_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6276..7403)
DNA (1128bp) protein (376aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037346B5 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB86830.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_4512_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7457..8044
DNA (588bp) protein (196aa)
putative L-lactate dehydrogenase family protein; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272]
dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3A1CC
Uncharacterized protein {ECO:0000313|EMBL:KKB86831.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_4512_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8181..9185
DNA (1005bp) protein (335aa)
Alcohol dehydrogenase n=1 Tax=Rhizobium loti RepID=M5AM20_RHILI rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KKB86803.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
alcohol dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_4512_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9789..10628
DNA (840bp) protein (280aa)
gabDf2; succinate-semialdehyde dehydrogenase protein (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0USN5_RHILV
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KKB86804.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_bf_scaffold_4512_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10628..11464
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037B9033
Uncharacterized protein {ECO:0000313|EMBL:KKB86805.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
esterase/lipase
SCNpilot_expt_500_bf_scaffold_4512_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11486..13333)
DNA (1848bp) protein (616aa)
Putative glycosyl transferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9I8_PELHB rbh
Putative glycosyl transferase {ECO:0000313|EMBL:KFC61245.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative glycosyl transferase rbh
SCNpilot_expt_500_bf_scaffold_4512_14
unknown

Not on your lists

comp(13349..13795)
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4512_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13987..15009)
DNA (1023bp) protein (341aa)
Chaperone protein Hsp33 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T1_PELHB rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
chaperone protein Hsp33; K04083 molecular chaperone Hsp33 rbh
SCNpilot_expt_500_bf_scaffold_4512_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15099..16028)
DNA (930bp) protein (310aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Ornithine carbamoyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8T0_PELHB
ornithine carbamoyltransferase
SCNpilot_expt_500_bf_scaffold_4512_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16152..17351)
DNA (1200bp) protein (400aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
acetylornithine aminotransferase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] rbh
Acetylornithine aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8S9_PELHB rbh
SCNpilot_expt_500_bf_scaffold_4512_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17702..18292
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8S8_PELHB
GcrA cell cycle regulator {ECO:0000313|EMBL:KFL32083.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein; K13583 GcrA cell cycle regulator
SCNpilot_expt_500_bf_scaffold_4512_19
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18368..18952
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L0G1_METC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK81684.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_500_bf_scaffold_4512_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18969..20216)
DNA (1248bp) protein (416aa)
phosphate regulon sensor protein PhoR (SphS); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
Phosphate regulon sensor protein PhoR (SphS) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R1_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB08134.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_4512_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20351..21175
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08133.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4512_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21349..22590)
DNA (1242bp) protein (414aa)
Aminopeptidase 2 (Aminopeptidase II) (AP-II) n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI75_RHITR
Peptidase M29 {ECO:0000313|EMBL:KKB08132.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aminopeptidase 2 (Aminopeptidase II) (AP-II)
SCNpilot_expt_500_bf_scaffold_4512_23
unknown

Not on your lists

22746..22868
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4512_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23239..25032
DNA (1794bp) protein (598aa)
multidrug ABC transporter ATPase n=1 Tax=Burkholderia bryophila RepID=UPI00036E7E4B
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KKB08131.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_500_bf_scaffold_4512_25
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25088..26587)
DNA (1500bp) protein (500aa)
ABC transporter, ATP-binding/permease protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R662_PELHB
Multidrug ABC transporter {ECO:0000313|EMBL:KFL29910.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_500_bf_scaffold_4512_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26960..28762)
DNA (1803bp) protein (601aa)
ABC transporter, ATP-binding/permease protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R661_PELHB rbh
Multidrug ABC transporter {ECO:0000313|EMBL:KFL29911.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_4512_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29049..29795
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NLT6_RHISP rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB08757.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4512_28
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29886..30695
DNA (810bp) protein (270aa)
Putative transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERQ8_9RHIZ rbh
LysR family regulatoy protein {ECO:0000313|EMBL:KFC61341.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
LysR family regulatoy protein rbh
SCNpilot_expt_500_bf_scaffold_4512_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30714..31511)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHB7_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:KKB08756.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4512_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31539..31769)
DNA (231bp) protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB10179.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Displaying 30 items

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