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AMDSBA1_42_21 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
sigma 38 (RpoS) similarity KEGG
DB: KEGG
49.7 296.0 268 2.80e-69 swo:Swol_1507
Group 2 RNA polymerase sigma factor n=1 Tax=Synechococcus phage S-CBS3 RepID=F4YCU2_9CAUD (db=UNIREF evalue=4.0e-29 bit_score=134.4 identity=38.3 coverage=73.77049180327869) similarity UNIREF
DB: UNIREF
38.3 73.77 134 4.00e-29 swo:Swol_1507
seg (db=Seg db_id=seg from=16 to=30) iprscan interpro
DB: Seg
null null null null swo:Swol_1507
SIGMA70_2 (db=PatternScan db_id=PS00716 from=266 to=292 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 swo:Swol_1507
SIGMA70_1 (db=PatternScan db_id=PS00715 from=97 to=110 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 swo:Swol_1507
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=30 to=142 evalue=2.8e-48) iprscan interpro
DB: Gene3D
null null null 2.80e-48 swo:Swol_1507
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=30 to=140 evalue=4.5e-47 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 4.50e-47 swo:Swol_1507
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=68 to=296 evalue=8.7e-27 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 8.70e-27 swo:Swol_1507
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=244 to=256 evalue=1.2e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.20e-25 swo:Swol_1507
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=121 to=129 evalue=1.2e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.20e-25 swo:Swol_1507
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=281 to=292 evalue=1.2e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.20e-25 swo:Swol_1507
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=266 to=281 evalue=1.2e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.20e-25 swo:Swol_1507
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=97 to=110 evalue=1.2e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.20e-25 swo:Swol_1507
(db=HMMPfam db_id=PF04542 from=73 to=142 evalue=9.6e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 9.60e-22 swo:Swol_1507
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=202 to=295 evalue=4.8e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 4.80e-21 swo:Swol_1507
(db=HMMPfam db_id=PF04545 from=240 to=294 evalue=1.6e-16 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.60e-16 swo:Swol_1507
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=226 to=304 evalue=3.1e-16 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 3.10e-16 swo:Swol_1507
(db=HMMPfam db_id=PF04539 from=152 to=227 evalue=1.0e-14 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.00e-14 swo:Swol_1507
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=146 to=219 evalue=1.7e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 1.70e-13 swo:Swol_1507
(db=HMMPfam db_id=PF00140 from=35 to=68 evalue=1.0e-05 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.00e-05 swo:Swol_1507
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=146 to=196 evalue=0.00011 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 1.10e-04 swo:Swol_1507
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas UNIPROT
DB: UniProtKB
49.7 296.0 268 1.40e-68 Q0AWU4_SYNWW
RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AWU4_SYNWW similarity UNIREF
DB: UNIREF90
49.7 null 267 4.10e-69 swo:Swol_1507