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AMDSBA3_37

Alias: AMDSBA3_C36

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_37_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(213..1358)
-----------------
DNA (1146bp)
protein (382aa)
glycoside hydrolase family protein
Polysaccharide deacetylase n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=E3I2L4_RHOVT (db=UNIREF evalue=3.3e-33 bit_score=148.3 identity=28.5 coverage=89.52879581151832)
seg (db=Seg db_id=seg from=6 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA3_37_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1422..2768)
-----------------
DNA (1347bp)
protein (449aa)
amino acid permease
amino acid permease
Amino acid permease-associated region n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU7_9FIRM (db=UNIREF evalue=3.2e-160 bit_score=570.5 identity=67.2 coverage=97.32739420935413)
transmembrane_regions (db=TMHMM db_id=tmhmm from=319 to=338)
AMDSBA3_37_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2768..3109)
-----------------
DNA (342bp)
protein (114aa)
putative sterol carrier protein
Putative sterol carrier protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU6_9FIRM (db=UNIREF evalue=4.2e-32 bit_score=142.9 identity=61.1 coverage=98.24561403508771)
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=1 to=103 evalue=4.9e-09 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
(db=HMMPfam db_id=PF02036 from=24 to=103 evalue=9.1e-07 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
AMDSBA3_37_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3106..4023)
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRQ6_9FIRM (db=UNIREF evalue=1.2e-70 bit_score=272.3 identity=47.7 coverage=97.05882352941177)
seg (db=Seg db_id=seg from=242 to=256)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I509_SULAT
AMDSBA3_37_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4235..5707)
-----------------
DNA (1473bp)
protein (491aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=SYK_PSYIN (db=UNIREF evalue=3.9e-119 bit_score=434.1 identity=45.7 coverage=98.98167006109979)
AMDSBA3_37_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5733..6206)
-----------------
DNA (474bp)
protein (158aa)
transcription elongation factor GreA
Transcription elongation factor GreA n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU3_9FIRM (db=UNIREF evalue=4.2e-67 bit_score=259.6 identity=84.1 coverage=98.73417721518987)
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
AMDSBA3_37_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6293..6850)
-----------------
DNA (558bp)
protein (186aa)
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU2_9FIRM (db=UNIREF evalue=2.3e-59 bit_score=234.2 identity=68.4 coverage=91.39784946236558)
HTH_CROC1 (db=ProfileScan db_id=PS50943 from=20 to=89 evalue=9.36 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA3_37_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6841..7827)
-----------------
DNA (987bp)
protein (329aa)
tRNA-U20-dihydrouridine synthase rbh
tRNA-U20-dihydrouridine synthase rbh
tRNA-dihydrouridine synthase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU1_9FIRM (db=UNIREF evalue=8.4e-150 bit_score=535.4 identity=78.0 coverage=99.3920972644377)
AMDSBA3_37_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7924..9201)
-----------------
DNA (1278bp)
protein (426aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWU0_9FIRM (db=UNIREF evalue=3.2e-61 bit_score=241.5 identity=32.9 coverage=96.24413145539906)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I503_SULAT
AMDSBA3_37_10
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(9397..10041)
-----------------
DNA (645bp)
protein (215aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase n=2 Tax=Thermoproteus tenax RepID=Q703Y2_THETE (db=UNIREF evalue=9.3e-25 bit_score=119.4 identity=37.1 coverage=89.30232558139535)
D-ribose-5-phosphate isomerase (RpiA), lid domain (db=superfamily db_id=SSF75445 from=117 to=192 evalue=1.8e-17)
rpiA: ribose 5-phosphate isomerase A (db=HMMTigr db_id=TIGR00021 from=2 to=209 evalue=1.4e-51 interpro_id=IPR004788 interpro_description=Ribose 5-phosphate isomerase, type A GO=Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751), Biological Process: pentose-phosphate shunt, non-oxidative branch (GO:0009052))
AMDSBA3_37_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10132..10899)
-----------------
DNA (768bp)
protein (256aa)
Type III pantothenate kinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWT9_9FIRM (db=UNIREF evalue=3.5e-95 bit_score=353.6 identity=67.9 coverage=96.875)
pantothenate kinase (EC:2.7.1.33) rbh
pantothenate kinase (EC:2.7.1.33) rbh
seg (db=Seg db_id=seg from=123 to=141)
AMDSBA3_37_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11047..12279
-----------------
DNA (1233bp)
protein (411aa)
molybdopterin molybdochelatase
Molybdopterin molybdochelatase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWT8_9FIRM (db=UNIREF evalue=1.7e-131 bit_score=474.9 identity=58.2 coverage=99.27007299270073)
seg (db=Seg db_id=seg from=102 to=114)
AMDSBA3_37_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12469..13896)
-----------------
DNA (1428bp)
protein (476aa)
major facilitator superfamily protein
Metabolite transporter n=2 Tax=Thermoplasma volcanium GSS1 RepID=Q97CH7_THEVO (db=UNIREF evalue=4.3e-115 bit_score=420.6 identity=48.1 coverage=95.58823529411765)
transmembrane_regions (db=TMHMM db_id=tmhmm from=297 to=319)
transmembrane_regions (db=TMHMM db_id=tmhmm from=331 to=350)
AMDSBA3_37_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14528..15673
-----------------
DNA (1146bp)
protein (382aa)
ribD; riboflavin biosynthesis protein RibD
Riboflavin-specific deaminase/reductase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y7H6_9GAMM (db=UNIREF evalue=1.5e-62 bit_score=245.7 identity=38.0 coverage=93.19371727748691)
seg (db=Seg db_id=seg from=318 to=333)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=50 to=88 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_37_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15674..16288
-----------------
DNA (615bp)
protein (205aa)
ribE; riboflavin synthase subunit alpha
Riboflavin synthase n=11 Tax=Bacillus RepID=RISA_BACAM (db=UNIREF evalue=7.0e-30 bit_score=136.3 identity=39.0 coverage=98.53658536585365)
Riboflavin synthase, alpha subunit (db=HMMPIR db_id=PIRSF000498 from=1 to=202 evalue=2.0e-73 interpro_id=IPR001783 interpro_description=Lumazine-binding protein GO=Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: riboflavin biosynthetic process (GO:0009231))
RIBOFLAVIN SYNTHASE ALPHA CHAIN (db=HMMPanther db_id=PTHR21098 from=1 to=195 evalue=2.1e-65 interpro_id=IPR001783 interpro_description=Lumazine-binding protein GO=Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: riboflavin biosynthetic process (GO:0009231))
AMDSBA3_37_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16291..17493
-----------------
DNA (1203bp)
protein (401aa)
GTP cyclohydrolase-2
GTP cyclohydrolase-2
GTP cyclohydrolase II n=1 Tax=Lactobacillus versmoldensis KCTC 3814 RepID=UPI0002493229 (db=UNIREF evalue=6.3e-107 bit_score=393.3 identity=50.0 coverage=99.00249376558602)
AMDSBA3_37_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17520..17990
-----------------
DNA (471bp)
protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHU4_9BACT (db=UNIREF evalue=8.0e-34 bit_score=149.1 identity=52.6 coverage=94.90445859872611)
lumazine-synth: 6,7-dimethyl-8-ribityl (db=HMMTigr db_id=TIGR00114 from=15 to=150 evalue=3.4e-60 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
(db=HMMPfam db_id=PF00885 from=14 to=153 evalue=1.6e-53 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
AMDSBA3_37_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17969..18778)
-----------------
DNA (810bp)
protein (270aa)
biotin--acetyl-CoA-carboxylase ligase
Biotin/acetyl-CoA-carboxylase ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWT3_9FIRM (db=UNIREF evalue=1.5e-59 bit_score=235.3 identity=45.5 coverage=97.77777777777777)
seg (db=Seg db_id=seg from=143 to=155)
seg (db=Seg db_id=seg from=93 to=108)
AMDSBA3_37_19
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18775..19233)
-----------------
DNA (459bp)
protein (153aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PWY6_CATAD (db=UNIREF evalue=6.0e-18 bit_score=96.3 identity=39.0 coverage=90.84967320261438)
seg (db=Seg db_id=seg from=11 to=23)
HPPK (db=PatternScan db_id=PS00794 from=81 to=92 evalue=0.0 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396))
AMDSBA3_37_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19241..19600)
-----------------
DNA (360bp)
protein (120aa)
no description (db=HMMSmart db_id=SM00905 from=4 to=115 evalue=1.1e-31 interpro_id=IPR006157 interpro_description=Dihydroneopterin aldolase/epimerase domain GO=Molecular Function: dihydroneopterin aldolase activity (GO:0004150), Biological Process: folic acid-containing compound metabolic process (GO:0006760))
FOLATE SYNTHESIS PROTEINS (db=HMMPanther db_id=PTHR20941 from=1 to=118 evalue=1.8e-31)
DIHYDRONEOPTERIN ALDOLASE (db=HMMPanther db_id=PTHR20941:SF3 from=1 to=118 evalue=1.8e-31 interpro_id=IPR006156 interpro_description=Dihydroneopterin aldolase GO=Molecular Function: dihydroneopterin aldolase activity (GO:0004150), Biological Process: folic acid-containing compound metabolic process (GO:0006760))
Tetrahydrobiopterin biosynthesis enzymes-like (db=superfamily db_id=SSF55620 from=1 to=117 evalue=1.3e-30)
AMDSBA3_37_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19587..20438)
-----------------
DNA (852bp)
protein (284aa)
Dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=Bacillus sp. SG-1 RepID=A6CT71_9BACI (db=UNIREF evalue=3.2e-41 bit_score=174.5 identity=38.3 coverage=95.07042253521126)
seg (db=Seg db_id=seg from=54 to=66)
DHPS_1 (db=PatternScan db_id=PS00792 from=23 to=38 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
AMDSBA3_37_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21624..22658)
-----------------
DNA (1035bp)
protein (345aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4Z1_SULAT (db=UNIREF evalue=9.9e-69 bit_score=266.2 identity=39.5 coverage=96.23188405797102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
NHL repeat (db=superfamily db_id=SSF101898 from=48 to=341 evalue=1.2e-07)
AMDSBA3_37_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23387..25819)
-----------------
DNA (2433bp)
protein (811aa)
UvrD/REP helicase rbh
UvrD/REP helicase rbh
UvrD/REP helicase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWD2_9FIRM (db=UNIREF evalue=7.7e-197 bit_score=693.0 identity=45.9 coverage=97.28729963008631)
coiled-coil (db=Coil db_id=coil from=269 to=297 evalue=NA)
AMDSBA3_37_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25806..28229)
-----------------
DNA (2424bp)
protein (808aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWD1_9FIRM (db=UNIREF evalue=4.0e-68 bit_score=265.4 identity=29.2 coverage=95.54455445544554)
seg (db=Seg db_id=seg from=776 to=800)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=508 to=717 evalue=2.3e-08 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like)
AMDSBA3_37_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28496..30013)
-----------------
DNA (1518bp)
protein (506aa)
histidine ammonia-lyase (EC:4.3.1.3) rbh
Histidine ammonia-lyase n=1 Tax=Serratia odorifera DSM 4582 RepID=D4DX18_SEROD (db=UNIREF evalue=6.7e-90 bit_score=337.0 identity=39.3 coverage=97.03557312252964)
seg (db=Seg db_id=seg from=341 to=352)
PAL_HISTIDASE (db=PatternScan db_id=PS00488 from=139 to=155 evalue=0.0 interpro_id=IPR022313 interpro_description=Phenylalanine/histidine ammonia-lyases, active site GO=Molecular Function: ammonia-lyase activity (GO:0016841))
AMDSBA3_37_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30029..31324)
-----------------
DNA (1296bp)
protein (432aa)
peptidase M16 domain-containing protein rbh
peptidase M16 domain-containing protein rbh
Peptidase M16 domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH49_9FIRM (db=UNIREF evalue=5.2e-99 bit_score=367.1 identity=44.7 coverage=96.52777777777779)
AMDSBA3_37_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31321..32610)
-----------------
DNA (1290bp)
protein (430aa)
Peptidase M16 domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWC8_9FIRM (db=UNIREF evalue=6.2e-145 bit_score=519.6 identity=60.7 coverage=98.83720930232558)
peptidase M16 domain-containing protein
peptidase M16 domain-containing protein
AMDSBA3_37_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32658..34478)
-----------------
DNA (1821bp)
protein (607aa)
ftsH; ATP-dependent metalloprotease FtsH
ftsH; ATP-dependent metalloprotease FtsH
ATP-dependent zinc metalloprotease FtsH 3 n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=FTSH3_SYMTH (db=UNIREF evalue=4.3e-200 bit_score=703.4 identity=60.2 coverage=95.71663920922569)
AMDSBA3_37_29
unknown

Not on your lists

comp(34942..35190)
-----------------
DNA (249bp)
protein (83aa)
seg (db=Seg db_id=seg from=55 to=73)
seg (db=Seg db_id=seg from=10 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_37_30
unknown

Not on your lists

comp(35187..35435)
-----------------
DNA (249bp)
protein (83aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
seg (db=Seg db_id=seg from=66 to=77)
Displaying 30 items

View Taxonomy