ggKbase home page
Advanced Search
Search Help

AMDSBA3_31_15 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
mfd; transcription-repair coupling factor rbh similarity KEGG
DB: KEGG 		69.5 999.99 1624 0.0 say:TPY_0198
mfd; transcription-repair coupling factor rbh rbh KEGG
DB: KEGG 		69.5 999.99 1624 0.0 say:TPY_0198
Transcription-repair-coupling factor n=5 Tax=Synechocystis sp. PCC 6803 RepID=MFD_SYNY3 (db=UNIREF evalue=1.6e-171 bit_score=609.4 identity=45.3 coverage=56.19208087615838) similarity UNIREF
DB: UNIREF 		45.3 56.19 609 1.60e-171 say:TPY_0198
seg (db=Seg db_id=seg from=446 to=458) iprscan interpro
DB: Seg 		null null null null say:TPY_0198
seg (db=Seg db_id=seg from=335 to=345) iprscan interpro
DB: Seg 		null null null null say:TPY_0198
seg (db=Seg db_id=seg from=580 to=601) iprscan interpro
DB: Seg 		null null null null say:TPY_0198
seg (db=Seg db_id=seg from=466 to=479) iprscan interpro
DB: Seg 		null null null null say:TPY_0198
rbh rbh UNIREF
DB: UNIREF 		null null null null say:TPY_0198
mfd: transcription-repair coupling factor (db=HMMTigr db_id=TIGR00580 from=165 to=1099 evalue=0.0 interpro_id=IPR004576 interpro_description=Transcription-repair coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMTigr 		null null null 0.0 say:TPY_0198
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=570 to=863 evalue=2.7e-70) iprscan interpro
DB: superfamily 		null null null 2.70e-70 say:TPY_0198
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=24 to=383 evalue=4.0e-60) iprscan interpro
DB: superfamily 		null null null 4.00e-60 say:TPY_0198
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=804 to=1014 evalue=3.7e-52) iprscan interpro
DB: superfamily 		null null null 3.70e-52 say:TPY_0198
no description (db=HMMSmart db_id=SM00487 from=622 to=812 evalue=1.5e-34 interpro_id=IPR014001 interpro_description=DEAD-like helicase) iprscan interpro
DB: HMMSmart 		null null null 1.50e-34 say:TPY_0198
TRCF domain-like (db=superfamily db_id=SSF143517 from=1010 to=1170 evalue=4.9e-33) iprscan interpro
DB: superfamily 		null null null 4.90e-33 say:TPY_0198
(db=HMMPfam db_id=PF02559 from=501 to=598 evalue=1.9e-31 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) iprscan interpro
DB: HMMPfam 		null null null 1.90e-31 say:TPY_0198
CarD-like (db=superfamily db_id=SSF141259 from=491 to=570 evalue=1.1e-26 interpro_id=IPR003711 interpro_description=CarD-like/TRCF domain) iprscan interpro
DB: superfamily 		null null null 1.10e-26 say:TPY_0198
(db=HMMPfam db_id=PF03461 from=1026 to=1123 evalue=1.4e-24 interpro_id=IPR005118 interpro_description=Transcription-repair-coupling factor domain GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMPfam 		null null null 1.40e-24 say:TPY_0198
no description (db=HMMSmart db_id=SM00490 from=849 to=932 evalue=4.3e-20 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMSmart 		null null null 4.30e-20 say:TPY_0198
(db=HMMPfam db_id=PF00270 from=627 to=786 evalue=6.7e-18 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026)) iprscan interpro
DB: HMMPfam 		null null null 6.70e-18 say:TPY_0198
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=146 to=233 evalue=1.5e-17) iprscan interpro
DB: Gene3D 		null null null 1.50e-17 say:TPY_0198
(db=HMMPfam db_id=PF00271 from=859 to=931 evalue=7.4e-14 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMPfam 		null null null 7.40e-14 say:TPY_0198
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=805 to=948 evalue=7.2e-13) iprscan interpro
DB: Gene3D 		null null null 7.20e-13 say:TPY_0198
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=386 to=492 evalue=3.0e-10) iprscan interpro
DB: superfamily 		null null null 3.00e-10 say:TPY_0198
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=627 to=805 evalue=4.2e-05) iprscan interpro
DB: Gene3D 		null null null 4.20e-05 say:TPY_0198
HELICASE_CTER (db=ProfileScan db_id=PS51194 from=822 to=978 evalue=15.399 interpro_id=IPR001650 interpro_description=Helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: ProfileScan 		null null null 1.54e+01 say:TPY_0198
HELICASE_ATP_BIND_1 (db=ProfileScan db_id=PS51192 from=640 to=801 evalue=23.065 interpro_id=IPR014001 interpro_description=DEAD-like helicase) iprscan interpro
DB: ProfileScan 		null null null 2.31e+01 say:TPY_0198
Transcription-repair coupling factor n=2 Tax=Sulfobacillus acidophilus RepID=F8I4F7_SULAT similarity UNIREF
DB: UNIREF90 		69.5 null 1624 0.0 say:TPY_0198
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=679936 sp UNIPROT
DB: UniProtKB 		69.5 999.99 1624 0.0 G8TWA6_SULAD