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AMDSBA3_31

Alias: AMDSBA3_C30

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_31_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(199..618)
-----------------
DNA (420bp)
protein (140aa)
RNA binding S1 domain-containing protein
RNA binding S1 domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ00_9FIRM (db=UNIREF evalue=1.4e-32 bit_score=144.8 identity=55.1 coverage=89.28571428571429)
TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PROTEIN (S1 RNA BINDING DOMAIN) (db=HMMPanther db_id=PTHR10724 from=3 to=126 evalue=2.4e-17)
no description (db=HMMSmart db_id=SM00316 from=6 to=76 evalue=1.7e-25 interpro_id=IPR022967 interpro_description=RNA-binding domain, S1)
AMDSBA3_31_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(727..996)
-----------------
DNA (270bp)
protein (90aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB8_9FIRM (db=UNIREF evalue=1.5e-16 bit_score=90.9 identity=52.4 coverage=90.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4X7_SULAT
AMDSBA3_31_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(993..1226)
-----------------
DNA (234bp)
protein (78aa)
ECF subfamily RNA polymerase sigma-24 factor
Sigma-70 region 4 type 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB7_9FIRM (db=UNIREF evalue=2.2e-24 bit_score=116.7 identity=77.6 coverage=94.87179487179486)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=25 to=52 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF00196 from=9 to=52 evalue=1.2e-08 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA3_31_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1326..1727)
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB6_9FIRM (db=UNIREF evalue=1.1e-15 bit_score=88.6 identity=37.3 coverage=96.26865671641791)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
AMDSBA3_31_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1740..2012)
-----------------
DNA (273bp)
protein (91aa)
sporulation protein YabP
Sporulation protein YabP n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB5_9FIRM (db=UNIREF evalue=1.2e-24 bit_score=117.9 identity=58.2 coverage=97.8021978021978)
spore_yabP: sporulation protein YabP (db=HMMTigr db_id=TIGR02892 from=7 to=90 evalue=4.6e-21 interpro_id=IPR012504 interpro_description=Sporulation protein YabP)
(db=HMMPfam db_id=PF07873 from=7 to=72 evalue=2.0e-17 interpro_id=IPR022476 interpro_description=Sporulation protein YabP/YqfC)
AMDSBA3_31_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2172..2411)
-----------------
DNA (240bp)
protein (80aa)
RNA-binding S4 domain-containing protein
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=1 to=79 evalue=3.0e-18 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=77 evalue=3.8e-17)
(db=HMMPfam db_id=PF01479 from=1 to=47 evalue=1.9e-10 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723))
AMDSBA3_31_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2496..2876)
-----------------
DNA (381bp)
protein (127aa)
histone family protein DNA-binding protein
DNA-binding protein HU-1 n=1 Tax=Bacillus halodurans C-125 RepID=DBH2_BACHD (db=UNIREF evalue=8.2e-21 bit_score=105.5 identity=56.2 coverage=69.29133858267717)
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=81 to=100 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=36 to=125 evalue=5.1e-41 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
AMDSBA3_31_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2818..3711)
-----------------
DNA (894bp)
protein (298aa)
MazG nucleotide pyrophosphohydrolase rbh
Nucleoside triphosphate pyrophosphohydrolase n=527 Tax=Enterobacteriaceae RepID=MAZG_ECO57 (db=UNIREF evalue=2.5e-20 bit_score=105.1 identity=34.2 coverage=72.14765100671141)
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=74 to=177 evalue=3.8e-20)
(db=HMMPfam db_id=PF03819 from=100 to=170 evalue=1.1e-17 interpro_id=IPR004518 interpro_description=NTP pyrophosphohydrolase MazG, putative catalytic core)
AMDSBA3_31_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3786..5303)
-----------------
DNA (1518bp)
protein (506aa)
polysaccharide biosynthesis protein rbh
polysaccharide biosynthesis protein rbh
Polysaccharide biosynthesis protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWB1_9FIRM (db=UNIREF evalue=8.5e-194 bit_score=682.2 identity=67.7 coverage=99.60474308300395)
seg (db=Seg db_id=seg from=297 to=310)
AMDSBA3_31_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5379..6671)
-----------------
DNA (1293bp)
protein (431aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RD79_9RHOO (db=UNIREF evalue=1.6e-15 bit_score=89.7 identity=27.8 coverage=68.90951276102089)
seg (db=Seg db_id=seg from=271 to=283)
seg (db=Seg db_id=seg from=156 to=166)
AMDSBA3_31_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7356..7871
-----------------
DNA (516bp)
protein (172aa)
hypothetical protein (db=KEGG evalue=4.4e-17 bit_score=93.2 identity=29.9 coverage=97.09302325581395)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4G0_SULAT (db=UNIREF evalue=5.7e-17 bit_score=93.2 identity=29.9 coverage=97.09302325581395)
seg (db=Seg db_id=seg from=49 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
AMDSBA3_31_12
unknown

Not on your lists

7935..8234
-----------------
DNA (300bp)
protein (100aa)
7935..8234 + ( gc_cont=0.593)
AMDSBA3_31_13
unknown

Not on your lists

8410..9039
-----------------
DNA (630bp)
protein (210aa)
8410..9039 + ( gc_cont=0.500)
AMDSBA3_31_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9951..10505)
-----------------
DNA (555bp)
protein (185aa)
spoVT; stage V sprulation protein T rbh
spoVT; stage V sprulation protein T rbh
Stage V sprulation protein T n=2 Tax=Sulfobacillus acidophilus RepID=F8I4F9_SULAT (db=UNIREF evalue=7.4e-95 bit_score=352.1 identity=96.2 coverage=98.91891891891892)
AMDSBA3_31_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11271..14831)
-----------------
DNA (3561bp)
protein (1187aa)
mfd; transcription-repair coupling factor rbh
mfd; transcription-repair coupling factor rbh
Transcription-repair-coupling factor n=5 Tax=Synechocystis sp. PCC 6803 RepID=MFD_SYNY3 (db=UNIREF evalue=1.6e-171 bit_score=609.4 identity=45.3 coverage=56.19208087615838)
seg (db=Seg db_id=seg from=446 to=458)
AMDSBA3_31_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14890..15099)
-----------------
DNA (210bp)
protein (70aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWA5_9FIRM (db=UNIREF evalue=2.5e-19 bit_score=99.8 identity=58.0 coverage=97.14285714285714)
(db=HMMPfam db_id=PF10955 from=2 to=57 evalue=5.1e-09 interpro_id=IPR020115 interpro_description=Uncharacterised protein family YabK)
Q5WAD5_BACSK_Q5WAD5; (db=BlastProDom db_id=PD057826 from=2 to=63 evalue=0.007 interpro_id=IPR020115 interpro_description=Uncharacterised protein family YabK)
AMDSBA3_31_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15155..15694)
-----------------
DNA (540bp)
protein (180aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Colwellia psychrerythraea 34H RepID=PTH_COLP3 (db=UNIREF evalue=2.7e-25 bit_score=120.9 identity=36.6 coverage=98.88888888888889)
seg (db=Seg db_id=seg from=79 to=88)
PEPT_TRNA_HYDROL_1 (db=PatternScan db_id=PS01195 from=12 to=25 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
AMDSBA3_31_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15706..16647)
-----------------
DNA (942bp)
protein (314aa)
prsA; ribose-phosphate pyrophosphokinase rbh
prsA; ribose-phosphate pyrophosphokinase rbh
Ribose-phosphate pyrophosphokinase n=1 Tax=Pyrobaculum sp. 1860 RepID=G7VFG5_9CREN (db=UNIREF evalue=1.7e-30 bit_score=139.0 identity=35.2 coverage=85.98726114649682)
seg (db=Seg db_id=seg from=74 to=88)
AMDSBA3_31_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16670..18046)
-----------------
DNA (1377bp)
protein (459aa)
glmU; UDP-N-acetylglucosamine pyrophosphorylase
glmU; UDP-N-acetylglucosamine pyrophosphorylase
Bifunctional protein GlmU n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH85_9BACT (db=UNIREF evalue=1.4e-89 bit_score=335.9 identity=41.5 coverage=98.47494553376906)
AMDSBA3_31_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18225..18479)
-----------------
DNA (255bp)
protein (85aa)
SpoVG family protein
Putative septation protein spoVG n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNR5_9SPIO (db=UNIREF evalue=3.3e-18 bit_score=96.3 identity=50.0 coverage=97.6470588235294)
(db=HMMPfam db_id=PF04026 from=1 to=82 evalue=8.9e-36 interpro_id=IPR007170 interpro_description=Sporulation stage V, protein G GO=Biological Process: sporulation resulting in formation of a cellular spore (GO:0030435))
SpoVG (db=HAMAP db_id=MF_00819 from=1 to=83 evalue=24.233 interpro_id=IPR007170 interpro_description=Sporulation stage V, protein G GO=Biological Process: sporulation resulting in formation of a cellular spore (GO:0030435))
AMDSBA3_31_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18562..19821)
-----------------
DNA (1260bp)
protein (420aa)
ilvA; threonine dehydratase rbh
Putative pyridoxal-phosphate dependent enzyme n=1 Tax=uncultured marine crenarchaeote HF4000_APKG2O16 RepID=B3T6W7_9ARCH (db=UNIREF evalue=9.5e-82 bit_score=309.7 identity=41.9 coverage=92.14285714285714)
seg (db=Seg db_id=seg from=201 to=215)
seg (db=Seg db_id=seg from=85 to=98)
AMDSBA3_31_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19818..20654)
-----------------
DNA (837bp)
protein (279aa)
purine operon repressor, PurR
Purine operon repressor, PurR n=11 Tax=Thermoanaerobacter RepID=C7IS01_THEET (db=UNIREF evalue=4.0e-52 bit_score=210.7 identity=38.7 coverage=95.3405017921147)
seg (db=Seg db_id=seg from=152 to=165)
seg (db=Seg db_id=seg from=226 to=233)
AMDSBA3_31_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20651..21424)
-----------------
DNA (774bp)
protein (258aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NIJ7_9FIRM (db=UNIREF evalue=1.2e-37 bit_score=162.5 identity=38.4 coverage=91.47286821705426)
seg (db=Seg db_id=seg from=116 to=129)
AMDSBA3_31_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21443..22300)
-----------------
DNA (858bp)
protein (286aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7S6_GEMAT (db=UNIREF evalue=1.2e-14 bit_score=86.3 identity=29.6 coverage=87.06293706293707)
seg (db=Seg db_id=seg from=93 to=106)
seg (db=Seg db_id=seg from=235 to=248)
AMDSBA3_31_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22358..24985)
-----------------
DNA (2628bp)
protein (876aa)
cphA; cyanophycin synthetase rbh
cphA; cyanophycin synthetase rbh
Cyanophycin synthetase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR72_9FIRM (db=UNIREF evalue=1.9e-204 bit_score=718.4 identity=46.8 coverage=98.63013698630137)
seg (db=Seg db_id=seg from=163 to=172)
AMDSBA3_31_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24987..25748)
-----------------
DNA (762bp)
protein (254aa)
cyanophycinase (EC:3.4.15.6)
Cyanophycinase n=1 Tax=Pseudomonas anguilliseptica RepID=CPHE_PSEAG (db=UNIREF evalue=2.2e-09 bit_score=68.6 identity=27.2 coverage=79.13385826771653)
cyanophycinase: cyanophycinase (db=HMMTigr db_id=TIGR02069 from=2 to=237 evalue=3.2e-82 interpro_id=IPR011811 interpro_description=Peptidase S51, cyanophycinase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: cellular macromolecule metabolic process (GO:0044260))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=14 to=202 evalue=1.8e-18)
AMDSBA3_31_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25915..26169)
-----------------
DNA (255bp)
protein (85aa)
hypothetical protein
Putative uncharacterized protein n=8 Tax=Clostridium perfringens RepID=B1BRR2_CLOPF (db=UNIREF evalue=1.0e-14 bit_score=84.7 identity=50.0 coverage=85.88235294117646)
Uncharacterised protein Veg (db=HMMPIR db_id=PIRSF037257 from=1 to=84 evalue=3.8e-35 interpro_id=IPR009366 interpro_description=Protein of unknown function DUF1021)
(db=HMMPfam db_id=PF06257 from=5 to=77 evalue=1.6e-31 interpro_id=IPR009366 interpro_description=Protein of unknown function DUF1021)
AMDSBA3_31_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27358..27828)
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TW90_9FIRM (db=UNIREF evalue=2.4e-70 bit_score=270.4 identity=82.1 coverage=98.72611464968153)
(db=HMMPfam db_id=PF04308 from=14 to=156 evalue=7.1e-54 interpro_id=IPR007405 interpro_description=Bacteriophage KVP40, Orf299)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TW90_SULAD
AMDSBA3_31_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27825..28766)
-----------------
DNA (942bp)
protein (314aa)
ribosomal RNA small subunit methyltransferase A
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Sulfobacillus acidophilus RepID=G8TW89_9FIRM (db=UNIREF evalue=4.1e-61 bit_score=240.7 identity=47.8 coverage=85.6687898089172)
seg (db=Seg db_id=seg from=81 to=92)
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=77 to=104 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
AMDSBA3_31_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28721..29710)
-----------------
DNA (990bp)
protein (330aa)
hypothetical protein
hypothetical protein
3D domain protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTC0_9FIRM (db=UNIREF evalue=4.0e-19 bit_score=101.3 identity=46.4 coverage=33.33333333333333)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Displaying items 1-30 of 42 in total

View Taxonomy