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SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 57951-58000 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_78778
Species: Herbaspirillum seropedicae (50%)
2 1074 bp 66.29 3.72 100.28
SCNpilot_cont_750_p_scaffold_31774
Species: Microbacterium azadirachtae (100%)
3 2145 bp 70.58 5.83 100.28
SCNpilot_cont_750_p_scaffold_79030
Species: Afipia felis (100%)
2 1071 bp 59.48 1.87 100.28
SCNpilot_cont_750_p_scaffold_79052
Species: Pusillimonas sp. T7-7 (50%)
2 1071 bp 64.71 3.27 100.28
SCNpilot_cont_750_p_scaffold_54413
Species: Bradyrhizobium oligotrophicum (50%)
2 1427 bp 60.83 4.20 100.28
SCNpilot_cont_750_p_scaffold_31964
Species: Agrobacterium rubi (66.67%)
3 2136 bp 72.33 3.98 100.28
SCNpilot_cont_750_p_scaffold_54688
Species: Leifsonia aquatica (50%)
2 1421 bp 70.87 5.81 100.28
SCNpilot_cont_750_p_scaffold_79651
Species: Microbacterium mangrovi (66.67%)
3 1065 bp 69.01 2.82 100.28
SCNpilot_cont_750_p_scaffold_65067
Phylum: Proteobacteria (66.67%)
3 2127 bp 60.93 4.23 100.28
SCNpilot_cont_750_p_scaffold_79991
Species: Mycobacterium ulcerans (50%)
2 1062 bp 64.50 2.82 100.28
SCNpilot_cont_750_p_scaffold_55005
Species: Afipia felis (100%)
2 1415 bp 67.07 6.01 100.28
SCNpilot_cont_750_p_scaffold_80190
Species: Microbacterium sp. oral taxon 186 (50%)
2 1059 bp 67.89 2.83 100.28
SCNpilot_cont_750_p_scaffold_80221 2 1059 bp 50.14 4.72 100.28
SCNpilot_cont_750_p_scaffold_80253
Species: Novosphingobium sp. MD-1 (100%)
2 1059 bp 64.59 2.36 100.28
SCNpilot_cont_750_p_scaffold_80277
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (50%)
2 1059 bp 68.65 7.55 100.28
SCNpilot_cont_750_p_scaffold_26341
Genus: Achromobacter (100%)
3 2468 bp 66.73 4.56 100.28
SCNpilot_cont_750_p_scaffold_80529
Species: Kribbella flavida (50%)
2 1056 bp 71.40 1.89 100.28
SCNpilot_cont_750_p_scaffold_80554
Species: Novosphingobium sp. MD-1 (100%)
2 1056 bp 66.86 2.13 100.28
SCNpilot_cont_750_p_scaffold_32640
Order: Burkholderiales (100%)
3 2103 bp 61.48 4.64 100.29
SCNpilot_cont_750_p_scaffold_55829
Genus: Microbacterium (66.67%)
3 1400 bp 69.86 3.75 100.29
SCNpilot_cont_750_p_scaffold_40859
Species: Rhodanobacter spathiphylli (100%)
4 2100 bp 69.24 19.29 100.29
SCNpilot_cont_750_p_scaffold_81213
Species: Polaromonas sp. JS666 (50%)
2 1050 bp 74.19 3.33 100.29
SCNpilot_cont_750_p_scaffold_19188
Species: Hyphomicrobium denitrificans (50%)
4 3147 bp 63.68 4.61 100.29
SCNpilot_cont_750_p_scaffold_81419
Species: Microbacterium maritypicum (50%)
2 1047 bp 72.68 5.25 100.29
SCNpilot_cont_750_p_scaffold_26707
Species: Acetobacteraceae bacterium AT-5844 (66.67%)
3 2441 bp 65.38 4.40 100.29
SCNpilot_cont_750_p_scaffold_56157
Species: Stegodyphus mimosarum (50%)
2 1394 bp 53.08 3.41 100.29
SCNpilot_cont_750_p_scaffold_81827
Species: Gordonia otitidis (50%)
2 1044 bp 68.30 2.39 100.29
SCNpilot_cont_750_p_scaffold_81768
Species: Cupriavidus metallidurans (100%)
2 1044 bp 59.39 2.39 100.29
SCNpilot_cont_750_p_scaffold_56335
Species: Leifsonia xyli (100%)
2 1391 bp 70.38 2.52 100.29
SCNpilot_cont_750_p_scaffold_26824
Species: Kribbella flavida (66.67%)
3 2432 bp 67.02 4.52 100.29
SCNpilot_cont_750_p_scaffold_56497
Species: Mycobacterium arupense (66.67%)
3 1388 bp 68.08 2.88 100.29
SCNpilot_cont_750_p_scaffold_56636
Genus: Rhizobium (66.67%)
3 1385 bp 70.11 2.89 100.29
SCNpilot_cont_750_p_scaffold_56661
Species: Thioalkalivibrio sulfidiphilus (50%)
2 1385 bp 43.83 4.15 100.29
SCNpilot_cont_750_p_scaffold_82395
Species: RBG_16_Euryarchaeota_67_27_curated (50%)
2 1038 bp 66.96 2.41 100.29
SCNpilot_cont_750_p_scaffold_82665
Species: Shinella sp. DD12 (50%)
2 1035 bp 66.76 4.59 100.29
SCNpilot_cont_750_p_scaffold_82727
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
2 1035 bp 59.03 4.59 100.29
SCNpilot_cont_750_p_scaffold_56965
Species: Nitrobacter winogradskyi (66.67%)
3 1379 bp 67.01 3.63 100.29
SCNpilot_cont_750_p_scaffold_57152
Species: Mycobacterium smegmatis (50%)
2 1376 bp 70.28 4.36 100.29
SCNpilot_cont_750_p_scaffold_33525
Domain: Bacteria (66.67%)
3 2061 bp 68.03 3.64 100.29
SCNpilot_cont_750_p_scaffold_83302
Species: Rhodopseudomonas palustris (50%)
2 1029 bp 62.88 12.88 100.29
SCNpilot_cont_750_p_scaffold_83304
Species: Acidothermus cellulolyticus (100%)
2 1029 bp 70.36 3.64 100.29
SCNpilot_cont_750_p_scaffold_83328
Species: Nitrobacter hamburgensis (50%)
2 1029 bp 65.21 11.42 100.29
SCNpilot_cont_750_p_scaffold_33564
Order: Rhizobiales (100%)
3 2058 bp 61.66 4.62 100.29
SCNpilot_cont_750_p_scaffold_83595
Species: Delftia acidovorans (50%)
2 1026 bp 61.70 3.41 100.29
SCNpilot_cont_750_p_scaffold_83604
Species: Rhodococcus sp. PML026 (50%)
2 1026 bp 67.25 3.41 100.29
SCNpilot_cont_750_p_scaffold_83625
Species: Alicycliphilus sp. B1 (50%)
2 1026 bp 73.98 4.14 100.29
SCNpilot_cont_750_p_scaffold_57598
Genus: Gordonia (66.67%)
3 1367 bp 70.81 2.56 100.29
SCNpilot_cont_750_p_scaffold_84315
Species: Gordonia effusa (100%)
2 1020 bp 67.45 3.92 100.29
SCNpilot_cont_750_p_scaffold_58116
Species: Microbacterium azadirachtae (100%)
2 1358 bp 69.88 5.89 100.30
SCNpilot_cont_750_p_scaffold_84936 3 1014 bp 50.30 4.93 100.30
Displaying items 57951-58000 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.