ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_750_p_UNK

In projects: SCNPILOT_CONT_750_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.68 Longest contig: 77.80 Kbp Bin length: 113.12 Mbp GC content: 56.02 %
Contigs count: 58943 Features count: 154683 rRNAs count: 22 tRNAs count: 459

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 20
Displaying items 58001-58050 of 58943 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_750_p_scaffold_58431
Species: Pusillimonas sp. T7-7 (100%)
2 1352 bp 67.53 4.25 100.30
SCNpilot_cont_750_p_scaffold_17547
Species: Rhodopseudomonas palustris (75%)
4 3374 bp 64.17 33.20 100.30
SCNpilot_cont_750_p_scaffold_43596
Species: R_Alphaproteobacteria_66_14 (50%)
2 1687 bp 71.07 4.45 100.30
SCNpilot_cont_750_p_scaffold_58597
Species: Sphaerobacter thermophilus (50%)
2 1349 bp 69.09 3.34 100.30
SCNpilot_cont_750_p_scaffold_85228
Species: Leifsonia aquatica (50%)
2 1011 bp 74.98 3.96 100.30
SCNpilot_cont_750_p_scaffold_58795 3 1346 bp 47.85 4.09 100.30
SCNpilot_cont_750_p_scaffold_85521
Species: Singulisphaera acidiphila (100%)
2 1008 bp 71.33 2.98 100.30
SCNpilot_cont_750_p_scaffold_85527
Species: Magnetospirillum magneticum (50%)
2 1008 bp 70.93 1.98 100.30
SCNpilot_cont_750_p_scaffold_85554
Species: Nocardia cyriacigeorgica (50%)
2 1008 bp 75.50 2.98 100.30
SCNpilot_cont_750_p_scaffold_44090 5 1672 bp 57.54 10.32 100.30
SCNpilot_cont_750_p_scaffold_86281
Species: Acidisphaera rubrifaciens (50%)
2 1002 bp 68.36 2.74 100.30
SCNpilot_cont_750_p_scaffold_86293
Species: RBG_16_Chloroflexi_68_14_curated (50%)
2 1002 bp 65.67 3.49 100.30
SCNpilot_cont_750_p_scaffold_86267
Species: Roseomonas cervicalis (50%)
2 1002 bp 75.55 2.74 100.30
SCNpilot_cont_750_p_scaffold_44178
Species: Streptomyces sp. HPH0547 (50%)
2 1669 bp 72.26 2.55 100.30
SCNpilot_cont_750_p_scaffold_59802
Genus: Mesorhizobium (50%)
4 1328 bp 65.36 4.14 100.30
SCNpilot_cont_750_p_scaffold_59829
Species: Afipia felis (100%)
2 1328 bp 66.04 3.39 100.30
SCNpilot_cont_750_p_scaffold_60181
Species: Arenimonas oryziterrae (50%)
2 1322 bp 60.06 3.40 100.30
SCNpilot_cont_750_p_scaffold_44842
Species: Sphingobium baderi (100%)
2 1651 bp 66.57 4.85 100.30
SCNpilot_cont_750_p_scaffold_28783
Species: Granulibacter bethesdensis (66.67%)
3 2309 bp 73.15 3.79 100.30
SCNpilot_cont_750_p_scaffold_20688
Species: Microbacterium azadirachtae (100%)
3 2964 bp 75.54 4.81 100.30
SCNpilot_cont_750_p_scaffold_35422
Species: Granulibacter bethesdensis (66.67%)
3 1971 bp 74.63 7.36 100.30
SCNpilot_cont_750_p_scaffold_45194
Species: Bradyrhizobium elkanii (50%)
2 1642 bp 69.18 6.55 100.31
SCNpilot_cont_750_p_scaffold_35490
Species: Afipia felis (100%)
3 1968 bp 62.60 3.30 100.31
SCNpilot_cont_750_p_scaffold_24283
Species: Ochrobactrum intermedium (66.67%)
3 2620 bp 63.85 10.02 100.31
SCNpilot_cont_750_p_scaffold_60930
Species: Mycobacterium arupense (100%)
2 1310 bp 63.66 2.67 100.31
SCNpilot_cont_750_p_scaffold_29082
Species: Acidisphaera rubrifaciens (66.67%)
3 2291 bp 58.32 2.84 100.31
SCNpilot_cont_750_p_scaffold_24367
Species: R_Betaproteobacteria_64_12 (50%)
4 2614 bp 62.82 5.16 100.31
SCNpilot_cont_750_p_scaffold_45823
Species: Skermanella stibiiresistens (66.67%)
3 1624 bp 64.16 4.62 100.31
SCNpilot_cont_750_p_scaffold_45833 2 1624 bp 48.34 4.77 100.31
SCNpilot_cont_750_p_scaffold_12138
Genus: Rhodanobacter (80%)
5 4546 bp 70.22 21.78 100.31
SCNpilot_cont_750_p_scaffold_62393
Class: Actinobacteria (66.67%)
3 1286 bp 73.33 3.11 100.31
SCNpilot_cont_750_p_scaffold_24925
Species: Rhodopseudomonas palustris (50%)
2 2569 bp 61.31 2.92 100.31
SCNpilot_cont_750_p_scaffold_13544
Species: Bordetella hinzii (100%)
6 4160 bp 66.27 6.13 100.31
SCNpilot_cont_750_p_scaffold_29970
Species: Acidisphaera rubrifaciens (66.67%)
3 2240 bp 73.04 4.46 100.31
SCNpilot_cont_750_p_scaffold_63349 3 1271 bp 57.20 2.75 100.32
SCNpilot_cont_750_p_scaffold_30363
Genus: Bradyrhizobium (66.67%)
3 2219 bp 58.31 6.99 100.32
SCNpilot_cont_750_p_scaffold_63746
Species: Pusillimonas sp. T7-7 (66.67%)
3 1265 bp 67.59 5.14 100.32
SCNpilot_cont_750_p_scaffold_37297
Species: Afipia felis (100%)
3 1896 bp 63.98 3.69 100.32
SCNpilot_cont_750_p_scaffold_64139
Species: Mycobacterium sinense (66.67%)
3 1259 bp 66.64 2.78 100.32
SCNpilot_cont_750_p_scaffold_64328
Species: GWC2_Chloroflexi_49_37_curated (50%)
2 1256 bp 69.82 2.79 100.32
SCNpilot_cont_750_p_scaffold_47995
Species: Microbacterium azadirachtae (100%)
3 1570 bp 71.02 4.14 100.32
SCNpilot_cont_750_p_scaffold_64517
Species: Absidia idahoensis (50%)
2 1253 bp 65.92 8.18 100.32
SCNpilot_cont_750_p_scaffold_64544
Domain: Bacteria (66.67%)
3 1253 bp 71.59 4.39 100.32
SCNpilot_cont_750_p_scaffold_30887
Order: Caulobacterales (66.67%)
3 2192 bp 64.32 9.24 100.32
SCNpilot_cont_750_p_scaffold_17160
Species: Afipia sp. 1NLS2 (83.33%)
6 3433 bp 66.73 5.32 100.32
SCNpilot_cont_750_p_scaffold_38086
Species: Nitrosospira sp. NpAV (50%)
2 1866 bp 62.97 104.77 100.32
SCNpilot_cont_750_p_scaffold_65101
Species: Pseudomonas bauzanensis (100%)
3 1244 bp 54.74 2.41 100.32
SCNpilot_cont_750_p_scaffold_65506 2 1238 bp 64.62 2.02 100.32
SCNpilot_cont_750_p_scaffold_65927
Species: Rhodopseudomonas palustris (66.67%)
3 1232 bp 62.82 4.87 100.33
SCNpilot_cont_750_p_scaffold_66639
Species: Mesorhizobium loti (50%)
2 1223 bp 70.16 3.27 100.33
Displaying items 58001-58050 of 58943 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.