ggKbase home page

SCNpilot_cont_500_bf_scaffold_4157_13

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 9832..10806

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFB3_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 67.8
  • Coverage: 292.0
  • Bit_score: 379
  • Evalue 3.30e-102
rpoNch; RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 292.0
  • Bit_score: 379
  • Evalue 1.00e-102
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.8
  • Coverage: 292.0
  • Bit_score: 379
  • Evalue 4.60e-102

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 975
ATGGCATTGTCGGCCAGTCTTTTTTTGCGCCAGAGCCAGTCTCTGGTGATGACGCCGCAACTGATGCAGTCGATCCAGCTGCTTCAGATGACGCATTTCGAGCTGACGCAATTCATCGCCCAGGAAGTCGAGAAGAACCCGTTGCTCGAATTTTCGGCAGGCGACGGCACGCCCGGCACCCATGGCGCCGACGAGGCCGACATGGCCTTCGGCGCCGAGGAACCGGGAGCCGGCGCGCCGGAGCCGGCCGCCCGCGACCTCTCGGCCGACTGGTACGAGAGCGAGAACACCGGCGCCGCCGACCGGTTGAGCAACCAGCTCGACACCAATTTCGAGGCCGGCCTTTCCGACGAGGCGATGCCCACGCGCGCCGATGCGCCTGAGCTTCTCAGCCAATGGAAATCCATGCCGGGCAGCGCGGGCGGCGAGAGCTACGATCTCGACGACTTCGTCGCCGGCCGCACGACGCTGCGCGAGCATCTCGAGGGGCAGGTCGTGTTGGCGCTGCCTTTGCCGGCCGACCGACTGACCGCACAGGTGCTGATCGACCATCTCGACGAGGCCGGCTACCTGCAGGCCGATATCGGCGAGATCGCCGCGCGGCTCGGCCGGGCCGCCTGCGAGGTGGATACGGTGCTGGAGACGCTGCAAGGCCTTGATCCGCCCGGCATCTTCGCCCGCTCGCTCAGCGAATGCCTGGCGATCCAGCTGCGGCAGAAGGACCGTTTCGACCCGGCGATGGCGGCGCTGATCGGCAATCTCGACCTCCTGGCGCGGCGCGATTTTCCGACGCTGAAGAAGCTGTGCGGCGTCGATGAGGAAGACCTCCTCGACATGCTTGCCGAAATCCGCAAGCTCAACCCCAACGCCCAGCGGCGGCTGGGCCGTCGAGCTGAACCCCGACACGCTACCGCGCGTGCTGGTCAACCAGTCCTACTACGCCGAGGTCAGCCGCCACAAACACCGGCCGGGTGA
PROTEIN sequence
Length: 325
MALSASLFLRQSQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVEKNPLLEFSAGDGTPGTHGADEADMAFGAEEPGAGAPEPAARDLSADWYESENTGAADRLSNQLDTNFEAGLSDEAMPTRADAPELLSQWKSMPGSAGGESYDLDDFVAGRTTLREHLEGQVVLALPLPADRLTAQVLIDHLDEAGYLQADIGEIAARLGRAACEVDTVLETLQGLDPPGIFARSLSECLAIQLRQKDRFDPAMAALIGNLDLLARRDFPTLKKLCGVDEEDLLDMLAEIRKLNPNAQRRLGRRAEPRHATARAGQPVLLRRGQPPQTPAG*