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SCNpilot_cont_750_bf_scaffold_517

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_517_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..589)
DNA (588bp) protein (196aa)
Cytochrome b/b6 domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CL25_PSEUX
cytochrome b/b6 domain-containing protein; K03891 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b/b6 domain protein {ECO:0000313|EMBL:AEA24954.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_2
unknown

Not on your lists

1157..1708
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1978..2553)
DNA (576bp) protein (192aa)
Transcriptional regulator, MarR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN93_PSEUX
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEA27117.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_4
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2733..4526
DNA (1794bp) protein (598aa)
thiamine pyrophosphate req_uiring enzyme; K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1] rbh
Thiamine pyrophosphate protein n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M3A2P1_9NOCA rbh
Thiamine pyrophosphate protein {ECO:0000313|EMBL:EME67218.1}; TaxID=1278076 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
SCNpilot_cont_750_bf_scaffold_517_5
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4530..5753
DNA (1224bp) protein (408aa)
mandalate racemase (EC:5.1.2.2) rbh
Mandalate racemase n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M3A414_9NOCA rbh
Mandalate racemase {ECO:0000313|EMBL:EME67219.1}; TaxID=1278076 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
SCNpilot_cont_750_bf_scaffold_517_6
unknown

Not on your lists

5788..6246
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_7
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6243..6641
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI0003657858
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP53652.1}; TaxID=369723 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
SCNpilot_cont_750_bf_scaffold_517_8
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6638..7129
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Mycobacterium avium RepID=UPI00036F2CC4
Uncharacterized protein {ECO:0000313|EMBL:KBZ62999.1}; TaxID=1324261 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis TKK-01-0051.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_517_9
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7138..7884
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) RepID=H8IPS2_MYCIA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFC44145.1}; TaxID=487521 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384; / NCTC 13025 / 3600).;"
SCNpilot_cont_750_bf_scaffold_517_10
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7884..9599
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Mycobacterium sp. MOTT36Y RepID=I2AF09_9MYCO rbh
GMC oxidoreductase family protein {ECO:0000313|EMBL:ETZ29375.1}; TaxID=1335421 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium intracellulare MIN_052511_1280.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_517_11
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9596..10699
DNA (1104bp) protein (368aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WC12_KINRD rbh
peptidase S1 and S6 chymotrypsin/Hap rbh
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:ABS04351.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_cont_750_bf_scaffold_517_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

10704..12194
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003738C62 rbh
oxidoreductase protein rbh
Oxidoreductase, molybdopterin binding protein {ECO:0000313|EMBL:ABG05645.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_cont_750_bf_scaffold_517_13
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12225..14051
DNA (1827bp) protein (609aa)
Glycosyl hydrolase, glucoamylase n=1 Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BRL8_MYCCN rbh
glycosyl hydrolase, glucoamylase rbh
Glycoside hydrolase {ECO:0000313|EMBL:KDE97750.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
SCNpilot_cont_750_bf_scaffold_517_14
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14048..15055
DNA (1008bp) protein (336aa)
Aldose 1-epimerase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EYV8_MODMB rbh
aldose 1-epimerase rbh
Aldose 1-epimerase {ECO:0000313|EMBL:CCH88571.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
SCNpilot_cont_750_bf_scaffold_517_15
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15052..16062
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BRL9_MYCCN rbh
short-chain dehydrogenase of unknown substrate specificity rbh
Uncharacterized protein {ECO:0000313|EMBL:AFM19926.1}; Flags: Precursor;; TaxID=710421 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
SCNpilot_cont_750_bf_scaffold_517_16
unknown

Not on your lists

16209..16565
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_17
unknown

Not on your lists

16815..17282
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_18
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17671..18171)
DNA (501bp) protein (167aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0FTX3_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK45199.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_750_bf_scaffold_517_19
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18168..19388)
DNA (1221bp) protein (407aa)
molybdopterin oxidoreductase n=1 Tax=Nocardiopsis sp. CNS639 RepID=UPI0003672B1B
molybdopterin oxidoreductase
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ADH70048.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
SCNpilot_cont_750_bf_scaffold_517_20
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19799..20593)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK32_PSEUX rbh
hypothetical protein; K07034 rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA28138.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_21
unknown

Not on your lists

21058..21249
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_22
unknown

Not on your lists

21349..21570
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_23
unknown

Not on your lists

comp(21598..21777)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_517_24
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22107..22949)
DNA (843bp) protein (281aa)
Selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] rbh
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Selenide, water dikinase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CU53_PSEUX rbh
SCNpilot_cont_750_bf_scaffold_517_25
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23022..24494
DNA (1473bp) protein (491aa)
L-seryl-tRNA selenium transferase; K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] rbh
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CU52_PSEUX rbh
SCNpilot_cont_750_bf_scaffold_517_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


24485..26368
DNA (1884bp) protein (628aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CU51_PSEUX rbh
selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor rbh
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:AEA23770.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26544..27467)
DNA (924bp) protein (308aa)
Polysulphide reductase, NrfD n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVR0_PSEUX rbh
polysulfide reductase NrfD rbh
Polysulphide reductase, NrfD {ECO:0000313|EMBL:AEA24620.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27545..28471)
DNA (927bp) protein (309aa)
4Fe-4S ferredoxin n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378850 rbh
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit rbh
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:AEA24621.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_750_bf_scaffold_517_29
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28471..31005)
DNA (2535bp) protein (845aa)
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:AEA24622.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEA24622.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVR2_PSEUX
SCNpilot_cont_750_bf_scaffold_517_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31114..31770)
DNA (657bp) protein (219aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:AEA24622.1}; EC=1.7.99.4 {ECO:0000313|EMBL:AEA24622.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Formate dehydrogenase, alpha subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVR2_PSEUX
Displaying items 1-30 of 86 in total

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