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SCNpilot_cont_750_bf_scaffold_594

Search features with annotation key words

Displaying items 61-90 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_594_61
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66305..66637)
DNA (333bp) protein (111aa)
Putative methylated DNA-protein cysteine methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NGW1_9GAMM
putative methylated DNA-protein cysteine methyltransferase
Cysteine methyltransferase {ECO:0000313|EMBL:AIF47165.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_cont_750_bf_scaffold_594_62
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66718..67122
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003070B47
Uncharacterized protein {ECO:0000313|EMBL:AIF47164.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_594_63
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67119..68243)
DNA (1125bp) protein (375aa)
Phosphate/sulfate permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1P4_9GAMM rbh
Phosphate/sulfate permease {ECO:0000313|EMBL:EIL93385.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphate/sulfate permease rbh
SCNpilot_cont_750_bf_scaffold_594_64
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68254..68883)
DNA (630bp) protein (210aa)
pit accessory protein n=1 Tax=Dyella japonica RepID=UPI0003028401 rbh
Pit accessory protein {ECO:0000313|EMBL:AIF47162.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
phosphate transport regulator related to PhoU rbh
SCNpilot_cont_750_bf_scaffold_594_65
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69063..70391
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87762.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
CBS domain-containing protein
SCNpilot_cont_750_bf_scaffold_594_66
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70491..71249)
DNA (759bp) protein (253aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA/rRNA methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRP1_9GAMM rbh
RNA methyltransferase, TrmH family, group 1 rbh
SCNpilot_cont_750_bf_scaffold_594_67
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71360..72163
DNA (804bp) protein (268aa)
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1P9_9GAMM rbh
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:EIL93390.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
inositol monophosphatase/fructose-1,6-bisphosphatase family protein
SCNpilot_cont_750_bf_scaffold_594_68
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72177..72431)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI000375858C
Strain LMCP11 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28724.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_594_69
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72663..73178)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJQ96024.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_594_70
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73180..73887)
DNA (708bp) protein (236aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1Q0_9GAMM
Putative permease {ECO:0000313|EMBL:EIL93391.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
regulatory inactivation of DnaA Hda protein
SCNpilot_cont_750_bf_scaffold_594_71
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73884..75077)
DNA (1194bp) protein (398aa)
Putative permease n=1 Tax=Rhodanobacter denitrificans RepID=M4NKI4_9GAMM rbh
Membrane protein {ECO:0000313|EMBL:AHX14446.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative permease rbh
SCNpilot_cont_750_bf_scaffold_594_72
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75103..76098)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQY8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90194.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_594_73
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76249..77283
DNA (1035bp) protein (345aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1) rbh
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NGW8_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_594_74
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77518..78177
DNA (660bp) protein (220aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylformylglycinamidine synthase, clade II n=1 Tax=Rhodanobacter sp. 115 RepID=I4WSS1_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_594_75
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78213..78917
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4U4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94485.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3108)
SCNpilot_cont_750_bf_scaffold_594_76
unknown

Not on your lists

comp(78921..79241)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_594_77
unknown

Not on your lists

comp(79238..79588)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_594_78
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79616..80875)
DNA (1260bp) protein (420aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKN0_9GAMM rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase rbh
SCNpilot_cont_750_bf_scaffold_594_79
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80964..81206)
DNA (243bp) protein (81aa)
BolA superfamily transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE5_9GAMM
putative transcriptional regulator, BolA superfamily
BolA superfamily transcriptional regulator {ECO:0000313|EMBL:EIM02387.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_750_bf_scaffold_594_80
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81352..82362
DNA (1011bp) protein (337aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Arabinose 5-phosphate isomerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKN2_9GAMM rbh
KpsF/GutQ family protein rbh
SCNpilot_cont_750_bf_scaffold_594_81
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82431..82979
DNA (549bp) protein (183aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ9_9GAMM rbh
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family rbh
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AGG90205.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_594_82
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82976..83584
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKN4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87775.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_594_83
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83541..84095
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F549F9
Sugar transporter {ECO:0000313|EMBL:AIF47146.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
lipopolysaccharide transport periplasmic protein LptA
SCNpilot_cont_750_bf_scaffold_594_84
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84098..84817
DNA (720bp) protein (240aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR02_9GAMM rbh
ABC-type (unclassified) transport system, ATPase component rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_594_85
unknown

Not on your lists

85106..85441
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_594_86
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85503..87635
DNA (2133bp) protein (711aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030407F1 rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIF47605.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent copper receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_750_bf_scaffold_594_87
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87744..89210
DNA (1467bp) protein (489aa)
RNA polymerase sigma-54 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WR03_9GAMM rbh
RNA polymerase, sigma 54 subunit, RpoN/SigL rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_594_88
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89346..89669
DNA (324bp) protein (108aa)
Ribosomal subunit interface protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W140_9GAMM
Ribosomal subunit interface protein {ECO:0000313|EMBL:EIL93181.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal subunit interface protein
SCNpilot_cont_750_bf_scaffold_594_89
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89800..90750
DNA (951bp) protein (317aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathi
serine kinase of the HPr protein, regulates carbohydrate metabolism (EC:2.7.1.-) rbh
HPr kinase/phosphorylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T4_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_594_90
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90755..91657
DNA (903bp) protein (301aa)
UPF0042 nucleotide-binding protein UUC_10667 n=1 Tax=Rhodanobacter denitrificans RepID=I4WR06_9GAMM rbh
putative P-loop-containing kinase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 61-90 of 192 in total

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